Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g0203 ATGGCTGGTGGTAGAAGAAGAAGAAGAAGGCAGCATTTCAGAAGGATTCATGCCTTTCCTTGTGGGAGAGCTTCTTTCAAAGATGAGCACTCCTTAATTGGAGGGCCAGGGTTTTCAAGGGTAGTTTACTGTAACGATCCAGATAGTTTTGAGGCCAGTCTTCTCAACTATGGAGGGAATTATGTCAAAACTTCAAAGTATACCATTGCTTCATTCGTCCCCAAATCGTTGTTTGAGCAATTTAGAAGGGTTGCCAACTTGTATTTCCTCCTTTGTGCTTTGCTTTCCTTTAGCCCTCTTTCGCCGTATTCGCCGGTCAGTAATGTTCTTCCTCTTGTTGTTGTTATTGGAGTCACCATGGCCAAGGAGGCTCTTGAAGATTGGAGGAGAACCAAACAGGATATGGAGATGAATAACAGGAAGGTGAAAGTACATATTCGAGATGGCGAGTTTGTTGAGACTAAATGGATGGACTTGAAGGTTGGAGATATAGTTAAAGTGGAAAAGGATGAATTCTTCCCTGCTGATCTCATTTTACTTTCGTCGAGTTATGAGGAAGCGATTTGCTACGTCGAGACAATGAACCTTGATGGGGAAACGAATTTGAAACTGAAAAACGCATTAGAAGCAAGCTCAAACTTACATGAAGATTCAAGCTTCCAGAATTTCAAGGCTATAATAAAATGTGAAGACCCCAATGCAAATTTGTATTCTTTTGTTGGCAGTATGGACCTTGAAGAGCAGCAACACCCCCTCAGCCCTCAACAGCTTCTCCTTCGAGACTCGAAGCTGCGGAACACGGATTTTATATATGGGGTGGTGATCTTTACAGGTCATGATACAAAGGTCATTCAGAACTCAACTGCTCCTCCTTCCAAGAGAAGCAAGATTGAGAAGAGGATGGATAAGATTGTGTTCTTCCTGTTTGCTGTCTTGGTTTTGATATCAATTGCTGGATCAATTTTCTTTGGAGTTTCGACTAGCGACGATATAGAAAATGGAAGAATTACAAGATGGTACCTTAGGCCAGATGATACCACAATATACTACAACCCCAAAGAAGCTCCAGCTGCAGCAATATTGCAATTTTTGACTGCTCTTATGCTTTTTAGCTATTTGATTCCCATATCATTGTATGTGTCTATTGAAATTGTCAAAGTTCTGCAGAGTGCCTTCATCAACCAAGATAGACATATGTATCATGAGGAAACTGATAAGCCAGCTCATGCCCGTACCTCAAATTTGAATGAAGAGCTTGGCCAAGTTGACACCATACTTTCTGATAAAACTGGGACATTGACCTGCAATTCAATGGAGTTTATCAAGTGTTCGGTGGGCGGGACTGCTTATGGGCGAGGAATTACAGAAGTAGAGAGAGCTCTTGCAAGAAGAAAGGAGTCAACTTTACCTGATAAATTAGAGGCCAAAGATGCACGTCTTAGCAGTGAAAAACCATCCATTAAGGGGTTCAATTTCAAGGACGAAAGAATAATGGACGGTAATTGGGTGAAGGAGCCTCGAGCCGATGTAATCCAGAAGTTCCTGCAGCTACTGGCCATCTGCCATACTGCATTGCCAGAAATTGATGAGGAAACTGGAAAAATTTCATATGAAGCTGAATCACCAGATGAGGCAGCTTTTGTGATTGCAGCAAGAGAATTTGGTTTTGAATTCTATGAAAGGACTCAGACAAGCATTTCGTTGCGAGAGTTCGACCCGGCCTCCGCCAAAATAGTCGAAAGATCATATCAACTACTGGATATTTTGGAATTTAATAGCACAAGAAAGAGGATGTCTGTGATTGTAAGAAATGAAAAGGGACAGCTACTACTACTTTGTAAAGGAGCTGACAGTGTTATGTTTGAAAGACTGGCAAAGAATGGAAGCGAGTTTGAAGAACAAACAAAGGTGCAGATTAACGAGTATGCCGATGCTGGTTTAAGAACTTTGGTGCTAGCGTATCGTGAGCTGAAGGAGGAGGAATTCAATACATTTCATCAAGAATTCATCAAAGCCAAAAACACAGTGAGCACAGATCGTGACGACATAATCGATCAGTTAACAGAAAGTGTTGAGAAAGATTTGATTCTTCTTGGTGCTACAGCAGTCCCTGAATGCATAGACAAACTTGCTCAGGCTGGAATTAAAATATGGGTTCTGACTGGAGATAAAATGGAAACAGCCATCAACATTGGCTTTGCTTGTAGTTTACTTAGACAAGGAATGAGGCAAATAATTATCAGCTCAGAAACTCCGGAAGGAAAAGCTTTAGACAAAGTCGAAGACATTCACAAATCTGCAGCTATCAAGGCGTTTAAGGCAAGTGTAACTCAGCAAATAACTGATGCAAAAGCATTACTTTCGACTTCGTGCGAAACCCCAGAAGCATTGGCTTTGATAATTGATGGAAAATCCCTCACCTATGCTCTGGAGGATGATGTGAAGGACCTATTTCTGGAGCTTGCCATTGGTTGTGCTTCAGTTATATGCTGCAGATCATCTCCAAAACAGAAAGCACAAGTTACCCAATTGGTTAAGGTTAAAACAGGCAGCACCACTCTAGCAGTTGGTGATGGTGCAAATGATGTCGGAATGCTCCAAGAAGCGGATATCGGGATTGTCATGTCAAGTGACATTGCAATAGCACAGTTTCGATATTTGGAACGGCTGCTTCTTGTGCATGGACATTGGTGTTACAGAAGGATCTCTTCCATGATTTGCTATTTCTTCTACAAGAACATTGTTTTTGGGTTCACTCTCTTCTTCTTTGAGTTGTATGCATCATTCTCCGGCCAAGCTGTATACAATGACTGGTTCATTTCGCTATACAATGTCTTCTTTACTTCTCTCCCTGTGATCGCATTGGGAGTATTTGATCAAGACGTCTCGTCCCGCTACTGTCTCAAGTTCCCACTTTTATACCAAGAAGGTGTCCAAAATGTCTTATTTAGTTGGGTTCGAGTTATCGGTTGGGTGTTCAACGGGCTACTAAGCTCTGTCATCATCTTCTTCTTTTGTATTGGGGCAATGGATCATCAAGCTTTTCGCAGCAGCGGAGAGGTCGTCGGGTTGGAAATTCTCGGCGCGACCATGTACACTTGTGTTGTTTGGGTTGTAAACTGTCAAATGGCATTGTCCATCAGTTACTTCACATACATTCAACATCTCTTCATCTGGGGCAGCATCATTCTCTGGTACTTGTTCCTCATGGCATATGGAGCTATAAATCCAACCATATCAACCACTGCATTTCAGGTCTTCATCGAGGCCTGCGCCCCGGCACCGTCGTTTTGGATCCTCACATTATTAGCTCTGGGAGCTTCCCTTCTCCCATACTTCATCTACGCATCGATCCAAATGCGGTTCTTCCCAATGTACCATCAAATGATTCAATGGATAAAAGCAGACGGACAGTCAAACGATCCAGAATACTGTCAAGTAGTGAGACAGAGATCACTTCGACACACGACCGTCGGTTACACAGCTCGGTTCGAAGCATCGAAGCATTTTGAAGAAATCCCAGAAATCAACAGCCATTAG 3540 42.4 MAGGRRRRRRQHFRRIHAFPCGRASFKDEHSLIGGPGFSRVVYCNDPDSFEASLLNYGGNYVKTSKYTIASFVPKSLFEQFRRVANLYFLLCALLSFSPLSPYSPVSNVLPLVVVIGVTMAKEALEDWRRTKQDMEMNNRKVKVHIRDGEFVETKWMDLKVGDIVKVEKDEFFPADLILLSSSYEEAICYVETMNLDGETNLKLKNALEASSNLHEDSSFQNFKAIIKCEDPNANLYSFVGSMDLEEQQHPLSPQQLLLRDSKLRNTDFIYGVVIFTGHDTKVIQNSTAPPSKRSKIEKRMDKIVFFLFAVLVLISIAGSIFFGVSTSDDIENGRITRWYLRPDDTTIYYNPKEAPAAAILQFLTALMLFSYLIPISLYVSIEIVKVLQSAFINQDRHMYHEETDKPAHARTSNLNEELGQVDTILSDKTGTLTCNSMEFIKCSVGGTAYGRGITEVERALARRKESTLPDKLEAKDARLSSEKPSIKGFNFKDERIMDGNWVKEPRADVIQKFLQLLAICHTALPEIDEETGKISYEAESPDEAAFVIAAREFGFEFYERTQTSISLREFDPASAKIVERSYQLLDILEFNSTRKRMSVIVRNEKGQLLLLCKGADSVMFERLAKNGSEFEEQTKVQINEYADAGLRTLVLAYRELKEEEFNTFHQEFIKAKNTVSTDRDDIIDQLTESVEKDLILLGATAVPECIDKLAQAGIKIWVLTGDKMETAINIGFACSLLRQGMRQIIISSETPEGKALDKVEDIHKSAAIKAFKASVTQQITDAKALLSTSCETPEALALIIDGKSLTYALEDDVKDLFLELAIGCASVICCRSSPKQKAQVTQLVKVKTGSTTLAVGDGANDVGMLQEADIGIVMSSDIAIAQFRYLERLLLVHGHWCYRRISSMICYFFYKNIVFGFTLFFFELYASFSGQAVYNDWFISLYNVFFTSLPVIALGVFDQDVSSRYCLKFPLLYQEGVQNVLFSWVRVIGWVFNGLLSSVIIFFFCIGAMDHQAFRSSGEVVGLEILGATMYTCVVWVVNCQMALSISYFTYIQHLFIWGSIILWYLFLMAYGAINPTISTTAFQVFIEACAPAPSFWILTLLALGASLLPYFIYASIQMRFFPMYHQMIQWIKADGQSNDPEYCQVVRQRSLRHTTVGYTARFEASKHFEEIPEINSH 1179
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1565867 1570781 - Lag0024248.1 Lac10g0203 582734
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g0203 1179 ProSitePatterns E1-E2 ATPases phosphorylation site. 428 434 IPR018303 -
Lac10g0203 1179 SUPERFAMILY HAD-like 421 901 IPR036412 -
Lac10g0203 1179 Gene3D - 465 701 IPR023299 GO:0000166(InterPro)
Lac10g0203 1179 Gene3D - 702 887 IPR023214 -
Lac10g0203 1179 FunFam Phospholipid-transporting ATPase 118 288 - -
Lac10g0203 1179 CDD P-type_ATPase_APLT_Dnf-like 59 1006 - -
Lac10g0203 1179 NCBIfam HAD-IC family P-type ATPase 822 929 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Lac10g0203 1179 NCBIfam HAD-IC family P-type ATPase 109 223 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Lac10g0203 1179 Pfam Phospholipid-translocating ATPase N-terminal 42 108 IPR032631 -
Lac10g0203 1179 Pfam Phospholipid-translocating P-type ATPase C-terminal 874 1124 IPR032630 -
Lac10g0203 1179 NCBIfam phospholipid-translocating P-type ATPase 57 1131 IPR006539 GO:0000287(InterPro)|GO:0005524(InterPro)|GO:0015914(InterPro)|GO:0016020(InterPro)|GO:0140326(InterPro)
Lac10g0203 1179 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 489 700 IPR023299 GO:0000166(InterPro)
Lac10g0203 1179 SFLD p-type atpase 408 897 IPR044492 -
Lac10g0203 1179 Gene3D - 117 288 - -
Lac10g0203 1179 SUPERFAMILY Calcium ATPase, transduction domain A 144 285 IPR008250 -
Lac10g0203 1179 Coils Coil 118 138 - -
Lac10g0203 1179 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 35 1128 - GO:0005886(PANTHER)|GO:0045332(PANTHER)|GO:0140326(PANTHER)
Lac10g0203 1179 FunFam Phospholipid-transporting ATPase 696 886 - -
Lac10g0203 1179 FunFam Phospholipid-transporting ATPase 540 698 - -
Lac10g0203 1179 SUPERFAMILY Calcium ATPase, transmembrane domain M 49 1124 IPR023298 -
Lac10g0203 1179 SFLD C1.7: P-type atpase like 408 897 - -
Lac10g0203 1179 PRINTS P-type cation-transporting ATPase superfamily signature 426 440 - -
Lac10g0203 1179 PRINTS P-type cation-transporting ATPase superfamily signature 856 875 - -
Lac10g0203 1179 Pfam E1-E2 ATPase 137 321 - -
Lac10g0203 1179 Pfam Cation transport ATPase (P-type) 520 624 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0203 Lac-Chr10:1565867 Lac8g1167 Lac-Chr8:24782303 0.00E+00 dispersed
Lac10g0203 Lac-Chr10:1565867 Lac13g0439 Lac-Chr13:3104800 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g0203 K01530 - csv:101209427 2142.85