Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g0216 ATGCCTCCAATACAACTGGGTCTCGATCCCGGTAGGTGCCTATTTGCGGGGATAGCTCAGTTGGGAGAGCATCAGATTGAAGATCTGAAGCACCAACATCTTATCACTAGTCGGATTTATCACCAAGTTGGTAATGGAGCCTCTACATTATTCTGGACCGATTCATGGGTTTCAAATTCCCCCTTGGCTTTGAGGCAACTCCAGGTGCCTATTAGAGCCATCATTATCGAAAGAAGGCGGAGGAAGATTTGGATCATATTCTGTGGAGTTGTGCCTATGCGCGTGCAGTGTGAGATTGGTTTGGTCAGTTGGTATGTGACATTTCCTGGTACAAAGGATCTTCTCAACCTTCTTTTGATGGAGTACCCTTTCAAGGATGGGAAGGCCTTACTTTGGAAGCACATCGCAAAGGCCTTCTTTTGGATTCTTTGGAAAGAAAGAAATCAAAGAGAATTTTGGAATAAAGAACCAGCCTTTGAAGATTTCCTTGATCTTGTCTTGAGCAAGGACAATCCTCCCCGAAAAACCTATGTGTATCAGGTAGACATCCCCGTCAATGCACATTGGATATCACTTGCCGTTGGACCATTTGAAATCCTTGCTGATCACCAAAATGGACTTATATCACACATGTGCTTGCCAGTTAATTCTTTAAAGCTCAAGCATACGGTGGAATTTTTTCATAGTGCATTCAGCTGCTATAAGGATTACCTCTCAGTGGACTTCCCATTTGGGTCATACAAACAAATCTTCATAGAGCCGGAGATAGCAGTATCATCAGCAAGTTTGGGAGTTTCCATGTGTATATTTAGTTCTCATCTTTTGTTTGATGAGAAAATCATTGATCAGACCATAGATACGAGGATTAAACTTGCTTATGCTCTTGCAAGACAGTGGTTTGGCATTTATATTACGCCTGAAGCCCCAAATGACGAGTGGTTGTTGGATGGTCTTGCTGGGTTTCTGACTGATTTATTCATCAAGAAGAACTTAGGAAATAATGAGGCACGCTACCAGAGATACAAGGCAAATTGCGCTGTGTGTAGGGCAGATGATAGTGGTTTGACCACCTTAAGTTCCTCTTCTGCTTGTAAAGATTTGTATGGGACCCAACGCATTGGTATATACGGAAAAATAAGATCATGGAAATCTGTAGCGATCCTTCAAATGTTGGAGAAGCAGATGGGGCCTGAGTCTTTCCGCAAGATTCTGCAAAATATTGTTTCTCGTGCTAAAGATACGACAACTACATCACAATCACTTAGCACGAAGGAGTTTCGTCATTTGGCCAATAAGATTGGAAACCTTGAGCGGCCATTTCTTAAAGAGTTCATTCCCCGGTGGGTTGAATCATGTGGTTGTCCATTGCTGAGGATGGGATTTTCCTACAACAAGCGGAAAAATATGGTTGAAATGGCAGTGTCACGGGAATGCACAGTTACACCAGCCACAAGTGTAGAAAATCGAGATAGTGATACTGGATGGCCTGGCATGATGAGTATCAGAATTTATGAACTTGATGGTGTGTTTGATCATCCAGTTCTTCCAATGACTGGAGAGTCTTGGCAGCTACTAGAAATACAATGCCACTCCAAACTTGCTGCTAGACGCCTCCAGAAAACTAAAAAGGGGTCAAAGCCTGATGGTTCTGATGACAATGCTGATATACCTGCACTCGATGTCCGATCTAGTGTGGAATCTCCTTTGTTATGGTTGAGAGCAGACCCTGAGATGGAATACCTAGCTGAAATTCACTTTCATCAACCTGTTCAGATGTGGATTAATCAATTAGAGAAGGACAAAGATGTCATTGCCCAAGCACAAGCAATTGCCACATTAGAGATGTTGCCTCAACCATCCTTTTCTGTTGTTAATGCTCTTAACAATTTCCTCAGAGACCCCAAGGCCTTCTGGAGAGTAAGAATTGAAGCAGCATTGGCGATGGCCAAAACAGCATCAGAGGATACTGATTGGGCTGGTTTGCTCAATTTGATTAAATTTTTTAAAAGTCAGAGATTTGATGCAGATACCGGACTCCCCAAGCCAAATGAATTTCGTGATTTTCCTGAGTATTTTGTTCTTGAGGCCATTCCTCATGCTGTTGCTATGGTCAGGGCCGCCGACCAAAAAAGCCCCAGAGAAGCTGTTGAGTTCGTTTTGCAACTTTTGAAGTATAACGACAACAATGGGAATCCTTACTCTGATGTTTTCTGGTTGGCTGCATTAGTCCAGTCAGTTGGTGAGCTTGAATTTGGGCAACAGAGCATTCTCTTTTTAGCATCACTTCTTAAACGGATTGATAGACTTTTGCAGTTCGACAGGTTGATGCCTAGCTACAATGGGATCTTGACTATTAGCTGCATCAGAACCTTGACCCAGATTGCACTGAAACTATCTGGACTTCTCTCTCTTGATCGTGTCTTTGAACTGATAAGACCTTTTCAAAATTTTAATTCCATGTGGCAAGTTCGAATTGAGGCAACCCGAGCACTTCTTGATCTTGAGTACCACTGCAATGGAATTGATGCAGCATTATTATTGTTTATTAAATATTTGGAAGAAGAGAAATCCTTGCGAGGGCAAGTGAAACTGGGGGTTCATGTTATGCGTTTATGTCAGATAATGAGACGATCTGATTCGAATGATTTAGTCAATAGTGACACTCTCGTTGCTTTGCTCCTCCTACTTGAAGGCCACATGGCATTTAACAATGTCTATCTTCGTCACTACTTGTTCTGTATTTTACAAGTGCTTGCTGGAAGGCCCCCAACACTTTATGGAGTTCCTAGAGAATATAAAATATTGCATATGGGTGACACGGGAACTTGCAGTGAACAAAAGAAGGTTTTAACTTCTCTCATTCCTGAATTTAATCCACCAGAGCCATCATCAGTCTCTGCATTAGCGCCAATGCCATCTATTCCAGCAAATCTATCATCAGAACCACTTGATACTCCCAAACTGAGGCCCGACAGCTTGGCAATTCCCGTGCTTTCCAAGGAAGCAGGAGCAATTCCAGAGGTTTCCAAGCAAGCTACGGCAATAGCAGAACCTCCTAGAGAAGCAGCCTCTGTTTCCAACAGTCACGAGAGGAAGTTGCCTGTTGTTAAGATCAAAGTCAGATCATCTGCTGCTACAAGTAGAGCAGATGCTGATAATCAAACCATTGAAAGATCTCATGCGGCACCCCATGAAACAGATGTTGGTCCTAGTAGTTCTGTTTCTGTTGATGCACCCCAAAGAAATATTGCCGAGGCTACAAGTATCAGCAACCATATTCTGGAGGAGGTTAACTCCTGTCATAATCACAGGTCTCATGATCACGGGTCTCACATGACAGCCAGCATTGGCAGTGCAAAACTTGCGAGTGATGGTGATGATCTTGGGAAGGAGTTCCAGTGCACTGCTGATTCCAGTAGGGCTTTTGGACATTTTCAGCCAGAAGATCCTTCATCATCGAGCATCATACAAGATAACAATGTTGATGCTGATGCACAGAAGTATGCAAGTCTTCAGACTCTTTCTTTACCACAGAACGACCATGGCTTAGCCTCTTTGCACTCTCGCCATGGGAAAAAAGAGAAAAAGAAAGACAAAGAAAAGAAACGAAAACGAGAAAGTCATAAAGAACACCGCAATGATCCTGCATACATCGAGCGCAAACGACTGAAGAAAGAGAAGAAGCAAAAAGAAAAAGAGATGGCAAAGCTATTGAATGAAGAGGTTAAGCCTGTGCCAATTGCAATGCCTCGTATAAAAGAACCACCAACCAAGTCAATACCTGTGCAGCTGGAAACAAACGAACCCAGTGGATCAAGATTAAACGTAGGAATTCATAGTAAGCCCGAGGCATCAGAAGGTACTACTTCTGCTGCCCCCAAACTTAGAATTAAATTCAAAAATCGGACGCTGAACAAGTCATAA 3924 42.79 MPPIQLGLDPGRCLFAGIAQLGEHQIEDLKHQHLITSRIYHQVGNGASTLFWTDSWVSNSPLALRQLQVPIRAIIIERRRRKIWIIFCGVVPMRVQCEIGLVSWYVTFPGTKDLLNLLLMEYPFKDGKALLWKHIAKAFFWILWKERNQREFWNKEPAFEDFLDLVLSKDNPPRKTYVYQVDIPVNAHWISLAVGPFEILADHQNGLISHMCLPVNSLKLKHTVEFFHSAFSCYKDYLSVDFPFGSYKQIFIEPEIAVSSASLGVSMCIFSSHLLFDEKIIDQTIDTRIKLAYALARQWFGIYITPEAPNDEWLLDGLAGFLTDLFIKKNLGNNEARYQRYKANCAVCRADDSGLTTLSSSSACKDLYGTQRIGIYGKIRSWKSVAILQMLEKQMGPESFRKILQNIVSRAKDTTTTSQSLSTKEFRHLANKIGNLERPFLKEFIPRWVESCGCPLLRMGFSYNKRKNMVEMAVSRECTVTPATSVENRDSDTGWPGMMSIRIYELDGVFDHPVLPMTGESWQLLEIQCHSKLAARRLQKTKKGSKPDGSDDNADIPALDVRSSVESPLLWLRADPEMEYLAEIHFHQPVQMWINQLEKDKDVIAQAQAIATLEMLPQPSFSVVNALNNFLRDPKAFWRVRIEAALAMAKTASEDTDWAGLLNLIKFFKSQRFDADTGLPKPNEFRDFPEYFVLEAIPHAVAMVRAADQKSPREAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSVGELEFGQQSILFLASLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLSGLLSLDRVFELIRPFQNFNSMWQVRIEATRALLDLEYHCNGIDAALLLFIKYLEEEKSLRGQVKLGVHVMRLCQIMRRSDSNDLVNSDTLVALLLLLEGHMAFNNVYLRHYLFCILQVLAGRPPTLYGVPREYKILHMGDTGTCSEQKKVLTSLIPEFNPPEPSSVSALAPMPSIPANLSSEPLDTPKLRPDSLAIPVLSKEAGAIPEVSKQATAIAEPPREAASVSNSHERKLPVVKIKVRSSAATSRADADNQTIERSHAAPHETDVGPSSSVSVDAPQRNIAEATSISNHILEEVNSCHNHRSHDHGSHMTASIGSAKLASDGDDLGKEFQCTADSSRAFGHFQPEDPSSSSIIQDNNVDADAQKYASLQTLSLPQNDHGLASLHSRHGKKEKKKDKEKKRKRESHKEHRNDPAYIERKRLKKEKKQKEKEMAKLLNEEVKPVPIAMPRIKEPPTKSIPVQLETNEPSGSRLNVGIHSKPEASEGTTSAAPKLRIKFKNRTLNKS 1307
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1668469 1686675 + Lag0024261.1 Lac10g0216 582747

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g0216 1307 FunFam Transcription initiation factor TFIID subunit 202 453 - -
Lac10g0216 1307 MobiDBLite consensus disorder prediction 1188 1206 - -
Lac10g0216 1307 SUPERFAMILY ARM repeat 388 920 IPR016024 -
Lac10g0216 1307 MobiDBLite consensus disorder prediction 1175 1294 - -
Lac10g0216 1307 Gene3D - 585 863 IPR011989 -
Lac10g0216 1307 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID 162 1244 IPR037813 GO:0000976(PANTHER)|GO:0003682(PANTHER)|GO:0005669(PANTHER)|GO:0005669(InterPro)|GO:0006367(PANTHER)|GO:0016251(PANTHER)
Lac10g0216 1307 MobiDBLite consensus disorder prediction 538 558 - -
Lac10g0216 1307 MobiDBLite consensus disorder prediction 1260 1274 - -
Lac10g0216 1307 Gene3D Neutral Protease Domain 2 201 453 IPR027268 -
Lac10g0216 1307 MobiDBLite consensus disorder prediction 541 555 - -
Lac10g0216 1307 Coils Coil 1218 1243 - -
Lac10g0216 1307 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 211 458 - -
Lac10g0216 1307 Pfam Peptidase family M1 domain 226 424 IPR014782 GO:0008237(InterPro)|GO:0008270(InterPro)
Lac10g0216 1307 MobiDBLite consensus disorder prediction 1009 1076 - -
Lac10g0216 1307 MobiDBLite consensus disorder prediction 1207 1239 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g0216 K03128 - - csv:101210662 2033.07
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0216 Lac-Chr10:1668469 Lac11g0034 Lac-Chr11:313249 2.00E-08 dispersed
Lac10g0216 Lac-Chr10:1668469 Lac9g1007 Lac-Chr9:23545217 8.10E-10 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g367 . . . . . . . . Cmo13g01082 . . . . . . Cpe20g00107 . . . . . . . . . . . . . . . Cone2ag0646 . . . Lsi02g00164 Csa01g00648 Chy12g01454 Cme12g01894 . . . Bda14g00912 . Bpe15g00546 Bma03g00887 . . . . Cma13g01041 . Car13g00873 . . . Bhi08g01209 . . Lac10g0216 . . . Cla04g01110 Cam04g1162 Cec01g1673 Cco01g1719 Clacu04g1190 Cmu04g1170 Cre01g1467 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010321 1 2 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 32