Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g0238 ATGGCTGAGTTCACTGCAAACTTTCAGAGCTTAAAGCCTTCATCTTTTCCTCTAATGGAAATGGATTCCAACCAAAATCCAAGTCTTCTCCATAACCCAAATGTCAATTTTCTTGACAACATTCCTGTTTTGTTCAATGACAGTTTCTTTGGCAATCCAGCTAATCCAGCTCCCAGATTCCTGGAAAATTGGGGAGAAAATTTCCCAGCAATTTTCTCTCAAGCCAATCAGAACAGTACTGCACCTGTTTTTGAGCCTGCAAATCCTTCTGGAAATGACCTCCATGGAACCAAAAAAAGAAAGCTTGAAACTGATGCATCTGAAAGCAGCTCAGCCAACTCAACTCCTCAGCTTTCTGAAACTGGGATCAAGACTAAAAATAGCTCTGGAAAAGGAAAGCGGTCGAAAAAAGGCGACGAAAACGACGGCGAGAAGCCGAGAGAAGTGGTTCATGTTAGAGCTAGAAGAGGCCAAGCAACAGACAGTCACAGTGTAGCAGAAAGGATAAGAAGAGGAAAGATCAATGAAAGATTGAAATGCTTGCAAGACATTGTCCCTGGATGCTACAAGACAATGGGAATGGCAGTGATGTTGGATGAGATAATAAATTATGTGCAGTCTTTGCAGAATCAAGTTGAGTTTCTTTCCATGAAACTCACAGCTGCAAGTTCCTATTATGACTTCAACTCAGACTCAGATTCTGCAGACAAACTGAAGGCAAAGGAAATGAGAGAGGGAAATGGAGGATTATTGGTTGCATCAACTCAACTTGGTCCATTTGATTTGAGCTTTGGTTCATTGCCATTCAACAGCATATGA 819 41.51 MAEFTANFQSLKPSSFPLMEMDSNQNPSLLHNPNVNFLDNIPVLFNDSFFGNPANPAPRFLENWGENFPAIFSQANQNSTAPVFEPANPSGNDLHGTKKRKLETDASESSSANSTPQLSETGIKTKNSSGKGKRSKKGDENDGEKPREVVHVRARRGQATDSHSVAERIRRGKINERLKCLQDIVPGCYKTMGMAVMLDEIINYVQSLQNQVEFLSMKLTAASSYYDFNSDSDSADKLKAKEMREGNGGLLVASTQLGPFDLSFGSLPFNSI 272
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1857593 1858897 - Lag0024283.1 Lac10g0238 582769
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g0238 272 MobiDBLite consensus disorder prediction 80 168 - -
Lac10g0238 272 Gene3D - 155 226 IPR036638 GO:0046983(InterPro)
Lac10g0238 272 SMART finulus 164 214 IPR011598 GO:0046983(InterPro)
Lac10g0238 272 CDD bHLH_AtBPE_like 148 233 - -
Lac10g0238 272 MobiDBLite consensus disorder prediction 132 168 - -
Lac10g0238 272 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 156 226 IPR036638 GO:0046983(InterPro)
Lac10g0238 272 FunFam transcription factor BEE 3-like 155 226 - -
Lac10g0238 272 Pfam Helix-loop-helix DNA-binding domain 162 209 IPR011598 GO:0046983(InterPro)
Lac10g0238 272 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 158 208 IPR011598 GO:0046983(InterPro)
Lac10g0238 272 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 89 233 IPR024097 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
Lac10g0238 272 MobiDBLite consensus disorder prediction 107 128 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0238 Lac-Chr10:1857593 Lac11g0170 Lac-Chr11:1577094 1.50E-30 dispersed
Lac11g1533 Lac-Chr11:26548141 Lac10g0238 Lac-Chr10:1857593 2.90E-09 transposed
Lac10g0238 Lac-Chr10:1857593 Lac3g0471 Lac-Chr3:3582503 4.20E-62 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22714 PF00010 HLH 1.90E-05 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g0238 - - - 0.0