Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac10g0238 | ATGGCTGAGTTCACTGCAAACTTTCAGAGCTTAAAGCCTTCATCTTTTCCTCTAATGGAAATGGATTCCAACCAAAATCCAAGTCTTCTCCATAACCCAAATGTCAATTTTCTTGACAACATTCCTGTTTTGTTCAATGACAGTTTCTTTGGCAATCCAGCTAATCCAGCTCCCAGATTCCTGGAAAATTGGGGAGAAAATTTCCCAGCAATTTTCTCTCAAGCCAATCAGAACAGTACTGCACCTGTTTTTGAGCCTGCAAATCCTTCTGGAAATGACCTCCATGGAACCAAAAAAAGAAAGCTTGAAACTGATGCATCTGAAAGCAGCTCAGCCAACTCAACTCCTCAGCTTTCTGAAACTGGGATCAAGACTAAAAATAGCTCTGGAAAAGGAAAGCGGTCGAAAAAAGGCGACGAAAACGACGGCGAGAAGCCGAGAGAAGTGGTTCATGTTAGAGCTAGAAGAGGCCAAGCAACAGACAGTCACAGTGTAGCAGAAAGGATAAGAAGAGGAAAGATCAATGAAAGATTGAAATGCTTGCAAGACATTGTCCCTGGATGCTACAAGACAATGGGAATGGCAGTGATGTTGGATGAGATAATAAATTATGTGCAGTCTTTGCAGAATCAAGTTGAGTTTCTTTCCATGAAACTCACAGCTGCAAGTTCCTATTATGACTTCAACTCAGACTCAGATTCTGCAGACAAACTGAAGGCAAAGGAAATGAGAGAGGGAAATGGAGGATTATTGGTTGCATCAACTCAACTTGGTCCATTTGATTTGAGCTTTGGTTCATTGCCATTCAACAGCATATGA | 819 | 41.51 | MAEFTANFQSLKPSSFPLMEMDSNQNPSLLHNPNVNFLDNIPVLFNDSFFGNPANPAPRFLENWGENFPAIFSQANQNSTAPVFEPANPSGNDLHGTKKRKLETDASESSSANSTPQLSETGIKTKNSSGKGKRSKKGDENDGEKPREVVHVRARRGQATDSHSVAERIRRGKINERLKCLQDIVPGCYKTMGMAVMLDEIINYVQSLQNQVEFLSMKLTAASSYYDFNSDSDSADKLKAKEMREGNGGLLVASTQLGPFDLSFGSLPFNSI | 272 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 1857593 | 1858897 | - | Lag0024283.1 | Lac10g0238 | 582769 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac10g0238 | 272 | MobiDBLite | consensus disorder prediction | 80 | 168 | - | - | |
Lac10g0238 | 272 | Gene3D | - | 155 | 226 | IPR036638 | GO:0046983(InterPro) | |
Lac10g0238 | 272 | SMART | finulus | 164 | 214 | IPR011598 | GO:0046983(InterPro) | |
Lac10g0238 | 272 | CDD | bHLH_AtBPE_like | 148 | 233 | - | - | |
Lac10g0238 | 272 | MobiDBLite | consensus disorder prediction | 132 | 168 | - | - | |
Lac10g0238 | 272 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 156 | 226 | IPR036638 | GO:0046983(InterPro) | |
Lac10g0238 | 272 | FunFam | transcription factor BEE 3-like | 155 | 226 | - | - | |
Lac10g0238 | 272 | Pfam | Helix-loop-helix DNA-binding domain | 162 | 209 | IPR011598 | GO:0046983(InterPro) | |
Lac10g0238 | 272 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 158 | 208 | IPR011598 | GO:0046983(InterPro) | |
Lac10g0238 | 272 | PANTHER | STEROL REGULATORY ELEMENT-BINDING PROTEIN | 89 | 233 | IPR024097 | GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro) | |
Lac10g0238 | 272 | MobiDBLite | consensus disorder prediction | 107 | 128 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac10g0238 | Lac-Chr10:1857593 | Lac11g0170 | Lac-Chr11:1577094 | 1.50E-30 | dispersed | |
Lac11g1533 | Lac-Chr11:26548141 | Lac10g0238 | Lac-Chr10:1857593 | 2.90E-09 | transposed | |
Lac10g0238 | Lac-Chr10:1857593 | Lac3g0471 | Lac-Chr3:3582503 | 4.20E-62 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
22714 | PF00010 | HLH | 1.90E-05 | No_clan | Lac | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac10g0238 | - | - | - | 0.0 |