Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g0241 ATGCTTTCGATGGGGCTTTTGTCTTCTCTCTGTGCCTGCTTGCAGAAGAGACTTAAAGCAGCTAATTCAGCAGGTGCCGATGAAGCGGATGATGAAGATGTGTCTACGGACATCTTCTTTGAACTCAGTGCTCTGCAAATTGCTACTAATTTCTTTTCCGAGGCGAATAAGCTCGGCCATGGAGGGTTTGGGCCGGTGTACAAGGGGTTGATGCCAAATGGTCAACAAGTAGCAGTCAAGAAGCTATCGGTAGATTCAAGACAAGGAGTGAGGCAATTTAGTAATGAAGTGAAACTTCTACTGAGAATTCAGCACAGAAATTTGGTCATTTTACTGGGCTGTTGTGTAGAAGGACCTGAAAAGATGCTTGTATATGAGTACCTGCCAAACAGAAGCCTCGATTACTTTCTTTTTGATAAAAAGAAGTCTCCATCCCTGGATTGGACAACACGGTTCCATATAATTACAAGTATTGTGAGAGGTCTTCTCTACTTACATGAAGAATCTCCTGCAAGAATAATACACAGAGATATCAAAGCCAGTAACATATTACTAGATGAGCAATTGAATCCAAAAATCTCAGATTTTGGGTTAGCACGACTTTTTCCCGGGGATGACACACATTTGAATACATTTAAGATCGCTGGTACTTATGGCTATATGGCTCCTGAATATGCACTTCATGGATATTTGTCTGTGAAGAGTGACGTTTTCAGTTTTGGCATCTTAGTATTAGAGATTGTAAGCGGAAGAAAAAATCATGATAATGGGCTCGGTATACAAAAGGCGGACCTCTTGGGATATGCATGGCGGCTTTACCAAGAAGGGAAGATTTTAGAATTAGTTGATCAAAGCCTAACAAAAAGCAATGCAGATGAAGCAGCTATGTGCATTCAGTTGGGTTTGTTATGTTGTCAAGCGAGTGTTACAGATAGGCCTGATATGAATGCCATTCATCTCATGCTTTCCAGTGATTCGTTCACGTTGCCGCGACCTGGGAAACCTGGAATTCTTGGTCGAGGAGCGCGTAGGACAACTACCTCTACTTCAGCTTTCACCAATTCGAATACTGCTAGTACACAAACTGGCGTTACCAGAGCTTCTGCTGGTAGTAGTTTGGTAGAGGATTATTCAAGAAATTCCATATCTATTTCTTCTACTGATGAAGGCAGGTGA 1176 41.92 MLSMGLLSSLCACLQKRLKAANSAGADEADDEDVSTDIFFELSALQIATNFFSEANKLGHGGFGPVYKGLMPNGQQVAVKKLSVDSRQGVRQFSNEVKLLLRIQHRNLVILLGCCVEGPEKMLVYEYLPNRSLDYFLFDKKKSPSLDWTTRFHIITSIVRGLLYLHEESPARIIHRDIKASNILLDEQLNPKISDFGLARLFPGDDTHLNTFKIAGTYGYMAPEYALHGYLSVKSDVFSFGILVLEIVSGRKNHDNGLGIQKADLLGYAWRLYQEGKILELVDQSLTKSNADEAAMCIQLGLLCCQASVTDRPDMNAIHLMLSSDSFTLPRPGKPGILGRGARRTTTSTSAFTNSNTASTQTGVTRASAGSSLVEDYSRNSISISSTDEGR 391
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1882042 1887685 - Lag0024286.1 Lac10g0241 582772
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g0241 391 FunFam Cysteine-rich receptor-like protein kinase 41 128 328 - -
Lac10g0241 391 FunFam Cysteine-rich receptor-like protein kinase 2 16 127 - -
Lac10g0241 391 CDD STKc_IRAK 58 322 - -
Lac10g0241 391 ProSitePatterns Serine/Threonine protein kinases active-site signature. 173 185 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac10g0241 391 Gene3D Transferase(Phosphotransferase) domain 1 128 328 - -
Lac10g0241 391 SUPERFAMILY Protein kinase-like (PK-like) 38 322 IPR011009 -
Lac10g0241 391 Pfam Protein tyrosine and serine/threonine kinase 55 320 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac10g0241 391 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 13 337 - GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Lac10g0241 391 MobiDBLite consensus disorder prediction 332 371 - -
Lac10g0241 391 Gene3D Phosphorylase Kinase; domain 1 12 127 - -
Lac10g0241 391 MobiDBLite consensus disorder prediction 342 371 - -
Lac10g0241 391 SMART serkin_6 52 327 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac10g0241 391 ProSiteProfiles Protein kinase domain profile. 52 322 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0241 Lac-Chr10:1882042 Lac12g0656 Lac-Chr12:6838027 2.60E-97 dispersed
Lac13g1400 Lac-Chr13:13574978 Lac10g0241 Lac-Chr10:1882042 1.10E-87 transposed
Lac10g0241 Lac-Chr10:1882042 Lac10g0731 Lac-Chr10:5680441 7.00E-72 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85612 PF07714 PK_Tyr_Ser-Thr 4.00E-46 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g0241 - - - 0.0