Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g0242 ATGAGATCTTCTTCCGAAAGAATCAACATCGCCGCCAGTACCCGGCGGCTCGATGTTGATCACCGATTTCCTCTTCGTTATTACTATCGAGTCGCCGATAATGTTTTGAAACAGGCTGACATCTTTCGAGCAGAGAAGAACATTATTGATCTTTATGTCATGTTAATGAGATTTTCGAGTTTGGTCACCGAGACAATACCTCGTCATTGGGAGTATGGGACAACTCTTAAATCCCAAAAAAATTATTTTAGAAAGAAGCTATTGAATGCTTTGAGCGAGCTTGAAGAATTGAAGCCAGCAGTTCAAAGAAAGGTGGATGAAATAAATGGAAAACAAAAATATCAAGTCAATGGATGGGGTAATCAGCATCAGAATGGTTCATTGGAATGGCATTCTGGTGGGAAGCAATATCTTACTGATAATAGTACAGCTAAGGCTGGTAGATCAGCTACTAGAGAAATTGCTCGTCAGGGTTCAGGGCCTCAACAATTTTCATATTCCAGATCTATTCGTATAGTTCCAAAGGAGGAAACATTATCCCGGCATTCTATTTTGGGTCCTAATGGGCTTCATGGCCAGTGGCAACCACCTATCATTGATAAAGGGGTCCAATATCCTCGTATTTTGGATCTGTCTCCTGTCGAAATTCCAAGCTTACAACAATCAATAGAAACCAAACTTACAATCAATAAAGATCTTGGAAACTTGGAAAAAGAAAGATCTGATATTCGCTCAAACTGCCCCCAGAATGAGGACAGTCAGATACCTAATGCCGTGGAAACCGGTTCCTTGATCTCCTTTGAAAATGTTGAAATGCCTGCCCCGATTGAAATTGTGCGACAGCCATCTCCTCCACCTGTACTTGCTGAAGTACAGGATCTGATACCTGCAATATCACCTCAAGTCCCCGAGGCAGAATGTGCCCAAGACACTTCATTGTCAGATGGTTTTGTTCATCCAGAAGCTTCAATGCAATTGCACATTTCGACCACGATGATGGAGAGCTTCATGAGGCTAGCCAAGTCAAATACTGCCAAGAATTTAGAAACTTGTGGTGTTCTTGCCGGTTCACTTAAAAACAGAAAATTTTATGTCACTGCACTCATTGTACCAAAGCAGGAATCAACACCAAATACTTGTCAGACGACAAATGAGGAAGAGATATTTGAAGTGCAGGATAAGCGTTCTCTATTCCCACTTGGGTGGATTCATACACATCCTACACAGTCATGCTTCATGTCCTCGGTTGATGTTCACACACATTACTCATATCAGGTAATGTTGCCTGAAGCTGTTGCAATTGTGATGGCTCCCAAGGATAGTGCAAGAAACCATGGCATTTTTCGGTTGACAACCCCAGGTGGCATGTCAATTATTCGGCAATGCCAACAACGTGGCTTTCACTCGCATGGTCAGCCTCCTGATGGCGGACCCATTTACAAAACCTGTACAGATGTATACATGGACCCCAACTTGAAATTTGATGTCATTGATCTTCGATGA 1503 42.32 MRSSSERINIAASTRRLDVDHRFPLRYYYRVADNVLKQADIFRAEKNIIDLYVMLMRFSSLVTETIPRHWEYGTTLKSQKNYFRKKLLNALSELEELKPAVQRKVDEINGKQKYQVNGWGNQHQNGSLEWHSGGKQYLTDNSTAKAGRSATREIARQGSGPQQFSYSRSIRIVPKEETLSRHSILGPNGLHGQWQPPIIDKGVQYPRILDLSPVEIPSLQQSIETKLTINKDLGNLEKERSDIRSNCPQNEDSQIPNAVETGSLISFENVEMPAPIEIVRQPSPPPVLAEVQDLIPAISPQVPEAECAQDTSLSDGFVHPEASMQLHISTTMMESFMRLAKSNTAKNLETCGVLAGSLKNRKFYVTALIVPKQESTPNTCQTTNEEEIFEVQDKRSLFPLGWIHTHPTQSCFMSSVDVHTHYSYQVMLPEAVAIVMAPKDSARNHGIFRLTTPGGMSIIRQCQQRGFHSHGQPPDGGPIYKTCTDVYMDPNLKFDVIDLR 500
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1891995 1897834 + Lag0024287.1 Lac10g0242 582773

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g0242 500 CDD MPN_AMSH_like 325 500 IPR044098 GO:0016579(InterPro)|GO:0061578(InterPro)|GO:0070536(InterPro)|GO:0140492(InterPro)
Lac10g0242 500 SUPERFAMILY JAB1/MPN domain 324 455 - -
Lac10g0242 500 FunFam AMSH-like ubiquitin thioesterase 3 4 120 - -
Lac10g0242 500 FunFam AMSH-like ubiquitin thioesterase 3 311 500 - -
Lac10g0242 500 ProSiteProfiles MPN domain profile. 326 456 IPR037518 -
Lac10g0242 500 Gene3D - 2 125 - -
Lac10g0242 500 PANTHER AMSH-LIKE PROTEASE 3 500 - GO:0005768(PANTHER)|GO:0016020(PANTHER)|GO:0070536(PANTHER)|GO:0071108(PANTHER)
Lac10g0242 500 SMART pad1_6 325 453 IPR000555 GO:0005515(InterPro)|GO:0008233(InterPro)|GO:0008237(InterPro)
Lac10g0242 500 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 324 430 IPR000555 GO:0005515(InterPro)|GO:0008233(InterPro)|GO:0008237(InterPro)
Lac10g0242 500 Coils Coil 84 111 - -
Lac10g0242 500 Gene3D Cytidine Deaminase, domain 2 312 500 - -
Lac10g0242 500 Pfam USP8 dimerisation domain 10 100 IPR015063 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g0242 K11866 - - csv:101214704 894.804
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0242 Lac-Chr10:1891995 Lac11g0914 Lac-Chr11:9892162 1.50E-121 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g306 Blo04g00830 . . . . Bpe13g00355 Bma06g00047 . Cmo13g01061 Cmo18g00038 . . . . . Cpe20g00126 . . . . . . . . . . . . . . . . . Cone13ag0305 . Lsi02g00186 Csa01g00669 Chy12g01434 Cme12g01872 . . Bda11g01770 . . . Bma03g00896 . Sed08g2186 . . Cma13g01020 Cma18g00045 Car13g00854 Car18g00039 Cpe09g01135 . Bhi08g01239 Tan05g2262 Cmetu12g0605 Lac10g0242 Hepe07g2388 . . Cla04g01086 . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005782 2 1 1 3 1 1 2 1 1 1 2 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 1 39