Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g0246 ATGGCTAATGAGCTGAAGCATTCTCCATTGCCCTCCAAGCTCCCCAATTCTCCATCTCATTTTTCCCATATCTTCCACTTTCTCTTCTTACTTATTGGCTTCTCCTTTGGAATCGCCATCAGTTTGAACCTCAAGAGCTTCTCATCATTCAGTTTCCAGCTCCCTATCTTTTCCCTTCAATCTTCACCACCAACACTGCAGCAGCCTCCCTCTTCACCCCCACCAACGCCATTGTCGCCGCCAGTACCACCGCCGTCTCCTTCGGACGACCCGAATGTAGAGCCACCTCTGATGCATAGAATGACAGATGATGAGGTGTTTTGGAGAGCATCCATGGTTCCAAGGATCAAAGGATTCCCATATGAAGGTGTGCCAAAAGTTGCGTTCATGTTTCTGATAAAGGGGTGGTTGCCTTTGGGTCCTTTGTGGGAAATGTTCTTCAAAGGGAATGAAGGGCTGTTTTCAATTTATGTGCACACTCATCCTTTGTTTAATGTTTCTTCTTCACTGCCTCCCAACTCTGTCTTCTATGGAAGAAGAATCCCAAGCCAGCCAGTGCAATGGGGAAAGCCGTCGATGATCGACGCCGAGCGCCGCCTTCTAGCAAACGCCCTCCTCGACTTCTCGAACCAAAGATTCATCTTACTCTCCGAAACCTGCATTCCTCTCTACAACTTCACCACAATCTACAACTACCTCCTCAATTCCAAACACACCTTCATTTCTTCTTACGACGATCCCCGCAAGATCGGCCGCGGCCGTTACAATCCTCGGATGTTTCCGACCGTGTCGGTCGACGACTGGCGAAAAGGATCGCAGTGGTTTGAAGCTGATCGGACGGTGGCCCTCGAGATCATCTCCGACAAAATTTATTATCCTATCTTCCGGGAGCACTGCGGGCCGCCGTGTTACATGGACGAGCATTACATTCCTACGTTAGTTAATATTGTTTTGCCCGACCGGAATTCCAACAGAACCGTTACGTGGGTTGATTGGTCCAAAAACGGTCCGCATCCCGGGAGATTTGGGCGGCGGGAGATTTCGGTCGAGTTTCTGAACCGGGTTCGTTTCGGTTTTAACTGTACTTATAATGGAAACGACGGCGTTTCTTTGTGCTTTCTGTTTGCTCGGAAATTCATGCCGGATTCTTTGCAACCTCTGCTGAAGATTTGGCCATCTCTGTTGCAAGGTTTGGTTTAA 1200 48.83 MANELKHSPLPSKLPNSPSHFSHIFHFLFLLIGFSFGIAISLNLKSFSSFSFQLPIFSLQSSPPTLQQPPSSPPPTPLSPPVPPPSPSDDPNVEPPLMHRMTDDEVFWRASMVPRIKGFPYEGVPKVAFMFLIKGWLPLGPLWEMFFKGNEGLFSIYVHTHPLFNVSSSLPPNSVFYGRRIPSQPVQWGKPSMIDAERRLLANALLDFSNQRFILLSETCIPLYNFTTIYNYLLNSKHTFISSYDDPRKIGRGRYNPRMFPTVSVDDWRKGSQWFEADRTVALEIISDKIYYPIFREHCGPPCYMDEHYIPTLVNIVLPDRNSNRTVTWVDWSKNGPHPGRFGRREISVEFLNRVRFGFNCTYNGNDGVSLCFLFARKFMPDSLQPLLKIWPSLLQGLV 399
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1911986 1914107 + Lag0024291.1 Lac10g0246 582777

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g0246 399 PANTHER CORE-2/I-BRANCHING BETA-1,6-N-ACETYLGLUCOSAMINYLTRANSFERASE FAMILY PROTEIN-RELATED 43 390 IPR044174 GO:0016757(InterPro)
Lac10g0246 399 MobiDBLite consensus disorder prediction 62 96 - -
Lac10g0246 399 MobiDBLite consensus disorder prediction 66 92 - -
Lac10g0246 399 Pfam Core-2/I-Branching enzyme 127 355 IPR003406 GO:0016020(InterPro)|GO:0016757(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g0246 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0246 Lac-Chr10:1911986 Lac4g0130 Lac-Chr4:2301711 4.80E-123 dispersed
Lac10g0246 Lac-Chr10:1911986 Lac10g0247 Lac-Chr10:1923792 2.30E-64 tandem
Lac10g0246 Lac-Chr10:1911986 Lac3g0461 Lac-Chr3:3517321 4.50E-105 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g296 . . . . . . . . . . Cma10g00306 . Car10g00291 . . Cpe20g00129 . . . . . . . . . . . . . . . . . Cone13ag0308 . Lsi02g00190 Csa01g00672 Chy12g01429 Cme12g01867 . . . . . . . . Sed08g2189 Cmo10g00327 . . . Car13g00850 . . . Bhi08g01242 Tan05g2258 Cmetu12g1703 Lac10g0246 Hepe07g2381 . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002679 1 2 1 1 1 2 2 2 2 2 1 2 0 2 2 2 2 6 2 2 2 3 2 2 2 1 2 2 2 3 58