Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g0254 ATGAAAATCTTCCTGAAACCCACCATCACTAACTTCTTCTTCATCTCCTTCATCGCGTTTCATCTTTCGCCATGTTTCAGCAAAGACGCCCTCGATGCATTCAAAGCTTGCGGTGTGAGTTACAATTGCGGAGAATTGGTGAACATCACGTATCCCTTCTGGGGGAATCAGGAGCAGGTGTCTTGCGGGCGGCAAGAATTTAAACTGAACTGCAGAAGCAACCGAACCACCACAATTTACATCAGTTCTCAGGAATACAACGTTCTGAAAATCGACCAATCCAATAACAGAATGAGGATCGCAAGATCAGACCTCTTCGATGATTACTGCCCACGAAGTCAAATCCAAGTGGCGAGTATGTTTCGCCATCCGTTCGTGTACTCTTCCAAGAATCAGAACATCTCGGTGTGGTACAATTGCTCGGCGGACAACAAAATTCATATACCGGAGCTCTACAATTTCTCCTGCGGTTGGGTAGCAGAAGAGGAAGGTAGAATGAATTATGCTTTCGAACCATCGGCGGCGAGTTGGAGTTCAGAAATGGAGGACTGTAAGATGAAGATAGAAGTGGCGGTAACGATAGAGTGGTTGAAAGAAGGAATAAAGAACAGGGCGAGCCTGGTGGAGAGAGCTGTGAAACAAGGGTTCGAGGTGGAATACGAGAATTGGTATAAGGGAGCGTGTGAAGAATGCAATGCAAGTGGAGGCAAATGTGCGGGAAACGACACGTACCCATTTTACTGCATCTGTAAAAACAGAGTTGCAAATCCTTACGTTTGTGAATCTGCTCTTTCTGTTGCTCCTGCTTCATCTCCTCTTCTTGCTCGTAGTGTTGGCATTGGTATTGGAGGCATAGTGTTAACGAGTCTAATCTTTTTCCTACGGCTTCGTTTGCACAAAAGGAAGCATCCTCATGCTTTCTCCTTCCTCCTTCAAAACAATTCTGCTGATCGTCCAATGAAGGAACTTGAGAAAGGAGAAAATTACCTGGGCGTGCCTGTATTCTCTTATAACGAACTTGTACGAGCTACAGACAAATTTAACCCTGCCAATGAACTTGGAGATGGTGGCTTTGGCACCGTCTACTATGGTAAACTCCGAGATGGGCGTGAGGTCGCAGTTAAACGATTGTTCGAAAATAACTATAGAAAAGTTCAGCATTTCATGAATGAAGTTGAGATCCTTACTCGTTTGCGCCACCCGCATCTAGTCACCCTTTATGGATCCACCTCTCGACGCTCCCGTGAGCTCTTGTTGGTTTATGAATTCATTCCGAATGGTACTGTGGCCGATCATCTTCATAGCAACCGAGCAAAACCTGGTGAGCTTCCATGGCATACAAGGTTGAAGATTGCCATAGATACTGCAAGTGCTCTGGCTTATCTCCATGCTTCAGAGACCATCCACCGTGATGTTAAAACCACCAACATTCTCCTTGACAACAACTTCAATGTCAAAGTTGCTGATTTTGGACTGTCTCGCCTTTTTCCTACACAAGCAACCCATGTTTCAACTGCTCCACAAGGAACTCCTGGCTATGTTGATCCGGAGTATCACGAATGTTATCAACTTACAAATAAAAGCGACGTCTTTAGCTTTGGAGTCGTCTTGGTTGAGCTGATATCTTCAAAGCCAGCAGTTGACATCACAAGGCACAGACATGAGATAAACCTGTGGACAATGGCAATCAACAAGATCCAGAACGACGAACTACATGACTTTGTAGACCCATCTCTCGGATTTGAAAAAGATCAAAGAATCAGAGACATGATCTGTGCAGTTGCAGAGTTGGCATTTCAATGCCTGCAAAGTGTGAAGGATACAAGGCCGTCGATGTTGGAGGCTCTAGAAATTCTAAAGATCATAGAGAGTCGAAGTGGTGGCAAAGGGAATGATGATGGGCTGCTGAAGAGTGGTTTAGTGCCACAATCCCCAGATTCTGTCATTGCGCCTTGGATTAGCAAAACTTCAACACCAAATGGTAGTGGGTGA 1992 45.08 MKIFLKPTITNFFFISFIAFHLSPCFSKDALDAFKACGVSYNCGELVNITYPFWGNQEQVSCGRQEFKLNCRSNRTTTIYISSQEYNVLKIDQSNNRMRIARSDLFDDYCPRSQIQVASMFRHPFVYSSKNQNISVWYNCSADNKIHIPELYNFSCGWVAEEEGRMNYAFEPSAASWSSEMEDCKMKIEVAVTIEWLKEGIKNRASLVERAVKQGFEVEYENWYKGACEECNASGGKCAGNDTYPFYCICKNRVANPYVCESALSVAPASSPLLARSVGIGIGGIVLTSLIFFLRLRLHKRKHPHAFSFLLQNNSADRPMKELEKGENYLGVPVFSYNELVRATDKFNPANELGDGGFGTVYYGKLRDGREVAVKRLFENNYRKVQHFMNEVEILTRLRHPHLVTLYGSTSRRSRELLLVYEFIPNGTVADHLHSNRAKPGELPWHTRLKIAIDTASALAYLHASETIHRDVKTTNILLDNNFNVKVADFGLSRLFPTQATHVSTAPQGTPGYVDPEYHECYQLTNKSDVFSFGVVLVELISSKPAVDITRHRHEINLWTMAINKIQNDELHDFVDPSLGFEKDQRIRDMICAVAELAFQCLQSVKDTRPSMLEALEILKIIESRSGGKGNDDGLLKSGLVPQSPDSVIAPWISKTSTPNGSG 663
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1962073 1964444 - Lag0024299.1 Lac10g0254 582785
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g0254 663 SUPERFAMILY Protein kinase-like (PK-like) 325 621 IPR011009 -
Lac10g0254 663 Pfam Wall-associated receptor kinase C-terminal 167 252 IPR032872 -
Lac10g0254 663 ProSitePatterns Protein kinases ATP-binding region signature. 353 375 IPR017441 GO:0005524(InterPro)
Lac10g0254 663 Pfam Protein tyrosine and serine/threonine kinase 351 616 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac10g0254 663 Gene3D Phosphorylase Kinase; domain 1 319 423 - -
Lac10g0254 663 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 32 657 IPR044652 GO:0004672(InterPro)|GO:0016301(PANTHER)|GO:0016310(PANTHER)
Lac10g0254 663 FunFam Wall-associated receptor kinase-like 20 424 631 - -
Lac10g0254 663 SMART serkin_6 347 622 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac10g0254 663 Gene3D Transferase(Phosphotransferase) domain 1 424 626 - -
Lac10g0254 663 Pfam Wall-associated receptor kinase galacturonan-binding 42 102 IPR025287 GO:0030247(InterPro)
Lac10g0254 663 ProSiteProfiles Protein kinase domain profile. 347 622 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0254 Lac-Chr10:1962073 Lac10g0260 Lac-Chr10:1982315 4.00E-207 dispersed
Lac4g0160 Lac-Chr4:2861915 Lac10g0254 Lac-Chr10:1962073 4.20E-10 dispersed
Lac7g0784 Lac-Chr7:6252317 Lac10g0254 Lac-Chr10:1962073 2.70E-12 dispersed
Lac10g0254 Lac-Chr10:1962073 Lac10g0255 Lac-Chr10:1965711 6.10E-272 tandem
Lac13g0788 Lac-Chr13:6245142 Lac10g0254 Lac-Chr10:1962073 9.20E-07 transposed
Lac10g0254 Lac-Chr10:1962073 Lac3g0460 Lac-Chr3:3514863 1.00E-138 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85615 PF07714 PK_Tyr_Ser-Thr 3.70E-47 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g0254 - - - 0.0