Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g0255 ATGAAAATCTCCCTAAATCCCATCATCAGTAACTTCTTCATCTCCTTCATCACGCTTCATCTTTCGCCATGTTTCAGCGAAAGCGCCCTCGATGAATCTAAAGCTTGCGGTGTGAGTTACAATTGCGGAGCATTGGTGAACATCACGGATCCCTTCTGGGGGAAGGAGAGGCCAGAGTCTTGCGGGTGGAAAGAATTCCATCTCAAGTGCAAACACAATCGAACCACCACAATTGAAATAAACTCGATGGAATATTACGTTCTGAAAATCAACCAGTCGAATAATAGAATGAGGATCGCAAGATCAGACCTCTTCGATAACTACTGCCCACAAAATCAAATCCAAAGAACAGCGACTCTGGGTGAACATCTCAGGAGATTCCGGAGAGTTACAAATTTGGGTGCGGTTGGAAAGAGGAATCTACAAATGGAGGAGTGTACGATGAACATCGAAGTGACGGTAGCGATGGAGGGCTTGAGAGAAGGTGTAAAGAACAAGATGAGTCTGGTGGAGACGGCTGTGAAACATGGGTTCGACGTGGAATACGGGAAGTGGTTTAAGGAGGCTTGCGACGGATGCAAGGAAAGTGGCGGAAAGTGTGGAGCAAATGGGACGAACCCATTTTACTGCATTTGTGGAAACGGAGTTGCAAATCCTTACTTCTTCTGTAAAGCTGCCATGCTTCCTGCTAGCAAATCAAATGCCATGACAGGTTTTGGCTCTGGTATTGGAGGCATACTCTTAATGAGTCTCATCTTTTTCATCAGACTTCGTTTGCACAAAAAGAAGCATCTTCGTGCTTCCTCCTTCCTCCTTCGAAACAATTCTTGTGATCCTCCAACCAAGGAACTTGAGAATGGAGAAAATTACATGGGCGTACCTCTCTTCTCCTTTCACGAACTTGTACAAGCTACAGACAAATTTAACCCAGCCAACGAACTTGGAGATGGTGGCTTTGGCACCGTCTACTATGGCAAACTCCGAGATGGGCGTGAGGTCGCAGTTAAACGATTGTTCGAAAATAGCTATAGAAAAGTTCAGCATTTCATGAATGAAGTTGAGATACTCACTCGTTTGCGCCACCCACATCTAGTCACCCTTTATGGATCCACCTCTCGACGCTCTCGTGAACTCTTGTTGGTTTATGAATTCATTTCCAATGGCACTGTTGCCGATCATCTTCATGGAAACCGAGCAAGACCCAGTGAGCTTCCATGGCATACAAGGTTGAAGATTGCCATAGAGACTGCAAGTGCTCTGGCTTTTCTCCATGCTTCTGAGATCATCCACCGTGATGTTAAAACCACCAACATTCTCCTTGACAACAACTTCAATGTGAAAGTTGCTGATTTTGGACTGTCTCGCCTTTTTCCGACACAAGCTACCCATATTTCAACTGCTCCACAAGGAACTCCTGGCTATGTTGATCCGGAGTACCACGAATGTTATCAACTTACAAATAAAAGCGACGTGTTTAGCTTTGGAGTCGTCTTGGTTGAGCTGATATCGTCAAAGCCAGCGGTTGACATCACAAGGCACAGACATGAGATTAACTTATCAACAATGGCGATAAACAAGATCCAAAACAACGAATTACACAACTTTGTAGACCCATCTCTCGGATTTGAAACGGATCAAAGAGTCAGAGACGTGATCTGGGCAGTTGCAGAGTTGGCATTTCGATGCTTGCAAAGTGTGAGGGATACAAGGCCGTCAATGTTAGAGGCTCTAGAGACTCTAAAGAACATAGAGAGTCGAAGTTGTGGCAAAGGGAAGGCAGAAGAAATAGGCATTTCAGGAGATGATGATGGGCTGCTGAAGGGTGGTTTAGTGCCACAATCCCCAAATTCTGTTATTGTTCCTTGGATTAGCAAATCTTCAACACCAAATGGTAGTGGGTGA 1902 44.95 MKISLNPIISNFFISFITLHLSPCFSESALDESKACGVSYNCGALVNITDPFWGKERPESCGWKEFHLKCKHNRTTTIEINSMEYYVLKINQSNNRMRIARSDLFDNYCPQNQIQRTATLGEHLRRFRRVTNLGAVGKRNLQMEECTMNIEVTVAMEGLREGVKNKMSLVETAVKHGFDVEYGKWFKEACDGCKESGGKCGANGTNPFYCICGNGVANPYFFCKAAMLPASKSNAMTGFGSGIGGILLMSLIFFIRLRLHKKKHLRASSFLLRNNSCDPPTKELENGENYMGVPLFSFHELVQATDKFNPANELGDGGFGTVYYGKLRDGREVAVKRLFENSYRKVQHFMNEVEILTRLRHPHLVTLYGSTSRRSRELLLVYEFISNGTVADHLHGNRARPSELPWHTRLKIAIETASALAFLHASEIIHRDVKTTNILLDNNFNVKVADFGLSRLFPTQATHISTAPQGTPGYVDPEYHECYQLTNKSDVFSFGVVLVELISSKPAVDITRHRHEINLSTMAINKIQNNELHNFVDPSLGFETDQRVRDVIWAVAELAFRCLQSVRDTRPSMLEALETLKNIESRSCGKGKAEEIGISGDDDGLLKGGLVPQSPNSVIVPWISKSSTPNGSG 633
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1965711 1968051 - Lag0024300.1 Lac10g0255 582786
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g0255 633 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 31 628 IPR044652 GO:0004672(InterPro)|GO:0016301(PANTHER)|GO:0016310(PANTHER)
Lac10g0255 633 FunFam Wall-associated receptor kinase-like 20 385 593 - -
Lac10g0255 633 SMART serkin_6 308 581 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac10g0255 633 Pfam Wall-associated receptor kinase C-terminal 139 214 IPR032872 -
Lac10g0255 633 SUPERFAMILY Protein kinase-like (PK-like) 285 580 IPR011009 -
Lac10g0255 633 ProSitePatterns Protein kinases ATP-binding region signature. 314 336 IPR017441 GO:0005524(InterPro)
Lac10g0255 633 Pfam Wall-associated receptor kinase galacturonan-binding 41 101 IPR025287 GO:0030247(InterPro)
Lac10g0255 633 Gene3D Phosphorylase Kinase; domain 1 281 384 - -
Lac10g0255 633 Pfam Protein kinase domain 311 578 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac10g0255 633 ProSiteProfiles Protein kinase domain profile. 308 583 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac10g0255 633 Gene3D Transferase(Phosphotransferase) domain 1 385 593 - -
Lac10g0255 633 ProSitePatterns Serine/Threonine protein kinases active-site signature. 428 440 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0255 Lac-Chr10:1965711 Lac3g0460 Lac-Chr3:3514863 1.60E-141 dispersed
Lac10g0261 Lac-Chr10:1987791 Lac10g0255 Lac-Chr10:1965711 3.30E-54 dispersed
Lac10g0255 Lac-Chr10:1965711 Lac10g0257 Lac-Chr10:1973201 7.50E-54 proximal
Lac10g0255 Lac-Chr10:1965711 Lac10g0260 Lac-Chr10:1982315 2.20E-207 proximal
Lac10g0254 Lac-Chr10:1962073 Lac10g0255 Lac-Chr10:1965711 6.10E-272 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85616 PF00069 Pkinase 7.60E-48 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g0255 - - - 0.0