Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g0256 ATGAAGAAAATGACAGACTCTTTCAAGAACAAGCTTGGCAAAGGAGGATTTAGCACTGTCTACAAAGGAAAGCTACCCGACGGACGCGATGTGGCAGTGAAACTTTTGAATGAATCCAGAGGAAATGCCCAAGATTTTATCAATGAAGTTGTTAGCATCTCCAAAACCTCGCACGTAAACGTAGCCACACTCTTAGGTTTCTGCTACGAGCGGAACAAAAGAGCTTTGATTTATGAATATATGCCTAAAGGGTCATTAGATAAGTATATATCCCGCAAAGGATCCCAGAGAAACAATGTTGAGTTGGATTGGAACACTCTCTATAACATCGTCATCGGCGTGGCACGGGGCTTAGAGTACTTGCATCGTGGTTGCAACACAAGGATTCTGCATTTTGATATCAAACCACACAACATACTTTTGGATAATGACTTCTGCCCCAAGATCTCTGACTTTGGGCTTGCCAAGCAGTGCAAGGCCAGAGAAAGTCATGTGTCAATGACAGGCGTGAAAGGGACGGTAGGGTTCATAGCACCAGAAGTAATATTTAGAAACTTTGGTAGGGTATCCCACAAGTCTGATGTTTATAGCTACGGAATGTTGGTTCTTGAAATGGTGGGAGAAAGAAAGAATCCCAATGAAGGAGTGGGGGAGAGCAGTGAAGAGTACTTCCCTGATTGGATATATAAGGATCTTACACAATGTGAAATAGATGGAGGCTGTCGGTGGGGAGAAACAGAGCAGGAAGAAGAAATAGCAAGAAAAATTATAATGGTGGGGTTGCATTGTATTCAGACATTGCCCGACGAGAGGCCGTCGATGAGTGATGTGGTTGCGATGTTGGAAGGCAGTGTCGATGGCTTACAAATTCCACCAAAACCTAACTTGTTTGGACCTCCTGCGACTGAGCTGCCCCCACCTTCTTCTTCTTCTTCATCGAGCTCGTAA 948 44.3 MKKMTDSFKNKLGKGGFSTVYKGKLPDGRDVAVKLLNESRGNAQDFINEVVSISKTSHVNVATLLGFCYERNKRALIYEYMPKGSLDKYISRKGSQRNNVELDWNTLYNIVIGVARGLEYLHRGCNTRILHFDIKPHNILLDNDFCPKISDFGLAKQCKARESHVSMTGVKGTVGFIAPEVIFRNFGRVSHKSDVYSYGMLVLEMVGERKNPNEGVGESSEEYFPDWIYKDLTQCEIDGGCRWGETEQEEEIARKIIMVGLHCIQTLPDERPSMSDVVAMLEGSVDGLQIPPKPNLFGPPATELPPPSSSSSSSS 315
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1968691 1969638 - Lag0024301.1 Lac10g0256 582787
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g0256 315 Gene3D Phosphorylase Kinase; domain 1 1 80 - -
Lac10g0256 315 MobiDBLite consensus disorder prediction 289 315 - -
Lac10g0256 315 ProSiteProfiles Protein kinase domain profile. 6 285 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac10g0256 315 ProSitePatterns Protein kinases ATP-binding region signature. 12 34 IPR017441 GO:0005524(InterPro)
Lac10g0256 315 PIRSF ILK 3 289 - -
Lac10g0256 315 PANTHER RUST RESISTANCE KINASE LR10-RELATED 1 298 IPR045874 GO:0004672(InterPro)
Lac10g0256 315 ProSitePatterns Serine/Threonine protein kinases active-site signature. 129 141 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac10g0256 315 SUPERFAMILY Protein kinase-like (PK-like) 7 282 IPR011009 -
Lac10g0256 315 Gene3D Transferase(Phosphotransferase) domain 1 81 289 - -
Lac10g0256 315 Pfam Protein tyrosine and serine/threonine kinase 8 281 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac10g0256 315 SMART serkin_6 6 281 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac10g0256 315 FunFam PR5-like receptor kinase 81 293 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0256 Lac-Chr10:1968691 Lac10g0259 Lac-Chr10:1976349 6.60E-152 dispersed
Lac10g0256 Lac-Chr10:1968691 Lac10g0258 Lac-Chr10:1975291 1.00E-91 proximal
Lac10g0256 Lac-Chr10:1968691 Lac10g0754 Lac-Chr10:5828947 2.40E-48 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85617 PF07714 PK_Tyr_Ser-Thr 1.40E-48 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g0256 - - - 0.0