Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g0258 ATGAATGAAGTTGTTAGCATCACCAAAGCATCGCATGTAAACATAGCCACCCTCCTAGGTTTCTGCTACGAGCGAAATAAAAGAGCTTTAGTTTATGAATATATGTCTAAAGGGTCACTGGATAAGTATATATTTCATAGAGGGCTGCAGAAAAATGTTGAGGAGTTGGATTGGAGCACAATCTATAGCATAGTTATTGGTATGGGTCGAGGTTTAGAGTATTTGCATTGCCGCTACAACACAAAGATATTGCATTTTGACATCAAACCACACAACATTCTTTTGGACAATGAGGTCTGCCCCAAGATCTCAGACTTTGGGCTTGCCAAGCAATGTCTGGCCAAAGAGAGTCATGTGTCAATGACCGGTATGAAGGGGACGGCAGGGTTCATAGCGCCCGAAGTAATATTTAGAAATCTTGGCAAGGTTTCTCACAAGTCTGATGTTTATAGTTATGGAATGTTGATTCTTGAGATGCTGGGTGAAAGAAAGCGTCCCAATCAAGGAGTGGGGGAGAGCAGAGAAGAGTACTTTCCTGATTGGATATATAAGGATCTTATGCAGCGAGAAATAGGTGGAGGAGGAGAAGATGATGTGCTGCTGAAGGGTGGTTTGGTGCCACAATCTCCAGATTCTGTTGTTGTTCCTTGGATGAGCAAATCTTCAACACCAAATGGTAGTGGCTAA 687 42.5 MNEVVSITKASHVNIATLLGFCYERNKRALVYEYMSKGSLDKYIFHRGLQKNVEELDWSTIYSIVIGMGRGLEYLHCRYNTKILHFDIKPHNILLDNEVCPKISDFGLAKQCLAKESHVSMTGMKGTAGFIAPEVIFRNLGKVSHKSDVYSYGMLILEMLGERKRPNQGVGESREEYFPDWIYKDLMQREIGGGGEDDVLLKGGLVPQSPDSVVVPWMSKSSTPNGSG 228
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1975291 1976055 - Lag0024303.1 Lac10g0258 582789
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g0258 228 Pfam Protein kinase domain 2 162 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac10g0258 228 Gene3D Transferase(Phosphotransferase) domain 1 1 190 - -
Lac10g0258 228 SUPERFAMILY Protein kinase-like (PK-like) 1 182 IPR011009 -
Lac10g0258 228 ProSiteProfiles Protein kinase domain profile. 1 228 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac10g0258 228 FunFam Os07g0541700 protein 35 127 - -
Lac10g0258 228 PANTHER RUST RESISTANCE KINASE LR10-RELATED 1 189 IPR045874 GO:0004672(InterPro)
Lac10g0258 228 ProSitePatterns Serine/Threonine protein kinases active-site signature. 83 95 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac10g0258 228 SMART serkin_6 1 218 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0258 Lac-Chr10:1975291 Lac4g0168 Lac-Chr4:3016273 1.30E-53 dispersed
Lac10g0256 Lac-Chr10:1968691 Lac10g0258 Lac-Chr10:1975291 1.00E-91 proximal
Lac10g0258 Lac-Chr10:1975291 Lac10g0259 Lac-Chr10:1976349 6.60E-77 tandem
Lac10g0258 Lac-Chr10:1975291 Lac10g0755 Lac-Chr10:5833192 2.90E-32 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85618 PF00069 Pkinase 5.20E-35 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g0258 - - - 0.0