Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g0259 ATGATCATCTATTGCTGGAGATGCAAGAGAAAATGCATATCAAACAACGACAATATTGAGGAAATGATCCGGAGATATTCCACACAAACACCCAAGCGATATAGTTACTCAAAGATGAAGAAAATCACAGACTCCTTCAAGAACAAACTTGGCCGAGGAGGATTTAGCACTGTTTACAAAGGAAAGCTACCCGACGGACGCGATGTGGCTGTGAAACTTTTGAAGGAATCCAGAGAAAATGACGAAGATTTTATCAATGAAGTTGTTAGCATCTCCAAAACCTCGCACATAAACATAGCCACACTCCTAGGTTTCTGCTACGAGCGGAACAAAAGAGCTTTGATTTATGAATATATGCCTAAAGGGTCATTAGATAAGTACATATCCCGCAACGGACCACACAGAAACAATGTTGAGTTGGATTGGAACACACTCTATAACATCGTCATCGGCGTGGCACGAGGCTTAGAGTACTTGCATCGTGGTTGCAACACAAGGATTTTGCATTTTGATATCAAACCACACAACATACTTTTGGATAATGACTTCTGCCCCAAGATTTCCGACTTTGGGCTTGCCAAGCAGTGCAAGGCCAGAGAAAGTCATGTGTCGCTGACAGGCGTGAAGGGGACGGTAGGGTTCATAGCACCAGAAGTAATATTTAGAAACTTTGGTAGGGTATCCCACAAGTCTGATGTTTATAGCTACGGAATGTTGGTTCTTGAAATGGTGGGAGAAAGAAAGAATCCCAATGAAGTAGATGGAGGCTGTCGGTGGGGAGAAACAGAGCAAGAAGAAGAAATGGCAAGAAAAATTATAATCGTGGGGTTGCATTGTATTCAGACATTGCCCGACGAGAGGCCGTCGATGAGTGATGTGGTTACGATGTTGGAAAGTACTGTTGATGGCTTACAAATTCCACCTAAACCCAACTTGTTTGGACCTCCAGCGATTGAGCAGCCCCAAACTTATGCTTCTTCTTTTTCATCCAATTAA 996 42.87 MIIYCWRCKRKCISNNDNIEEMIRRYSTQTPKRYSYSKMKKITDSFKNKLGRGGFSTVYKGKLPDGRDVAVKLLKESRENDEDFINEVVSISKTSHINIATLLGFCYERNKRALIYEYMPKGSLDKYISRNGPHRNNVELDWNTLYNIVIGVARGLEYLHRGCNTRILHFDIKPHNILLDNDFCPKISDFGLAKQCKARESHVSLTGVKGTVGFIAPEVIFRNFGRVSHKSDVYSYGMLVLEMVGERKNPNEVDGGCRWGETEQEEEMARKIIIVGLHCIQTLPDERPSMSDVVTMLESTVDGLQIPPKPNLFGPPAIEQPQTYASSFSSN 331
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1976349 1977344 - Lag0024304.1 Lac10g0259 582790
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g0259 331 SMART serkin_6 44 301 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac10g0259 331 ProSiteProfiles Protein kinase domain profile. 44 301 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac10g0259 331 PANTHER RUST RESISTANCE KINASE LR10-RELATED 13 315 IPR045874 GO:0004672(InterPro)
Lac10g0259 331 FunFam serine/threonine-protein kinase PBS1-like 13 118 - -
Lac10g0259 331 Gene3D Phosphorylase Kinase; domain 1 16 118 - -
Lac10g0259 331 ProSitePatterns Protein kinases ATP-binding region signature. 50 72 IPR017441 GO:0005524(InterPro)
Lac10g0259 331 ProSitePatterns Serine/Threonine protein kinases active-site signature. 167 179 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac10g0259 331 PIRSF ILK 9 306 - -
Lac10g0259 331 FunFam Os07g0541700 protein 119 211 - -
Lac10g0259 331 SUPERFAMILY Protein kinase-like (PK-like) 20 298 IPR011009 -
Lac10g0259 331 Pfam Protein tyrosine and serine/threonine kinase 46 297 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac10g0259 331 Gene3D Transferase(Phosphotransferase) domain 1 119 305 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0252 Lac-Chr10:1952595 Lac10g0259 Lac-Chr10:1976349 6.50E-124 dispersed
Lac10g0253 Lac-Chr10:1956134 Lac10g0259 Lac-Chr10:1976349 1.60E-58 dispersed
Lac10g0256 Lac-Chr10:1968691 Lac10g0259 Lac-Chr10:1976349 6.60E-152 dispersed
Lac10g0259 Lac-Chr10:1976349 Lac4g0168 Lac-Chr4:3016273 7.60E-90 dispersed
Lac10g0258 Lac-Chr10:1975291 Lac10g0259 Lac-Chr10:1976349 6.60E-77 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85619 PF07714 PK_Tyr_Ser-Thr 9.30E-47 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g0259 - - - 0.0