Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g0273 GCTGGTAAGTCTACAATTGGAGGTCAGATACTTTTCCTTAGCGATCAGGTTGATGAGCGTACGATCCAAAAGTACGAAAAAGAAGCAAAGGATAAGAGCAGAGAAAGCTGGTATATGGCATATATCATGGACACAAATGAAGAGGAGAGAGTCAAGGGGAAAACTGTTGAAGTAGGAAGAGCACATTTTGAAACTGAGACCACAAGGTTTACGATTTTGGATGCTCCGGGTCACAAAAGTTATGTGCCAAATATGATCAGTGGGGCATCTCAAGCTGATATTGGGGTTCTGGTAATTTCTGCTAGGAAAGGAGAATTTGAAACTGGATATGAGAAAGGTGGACAGACTCGTGAGCATGTTTTGCTAGCAAAAACGTTGGGTGTTGCTAAGCTTCTTGTTGTAGTGAATAAGATGGATGACCCCACCGTAAAGTGGTCCAAAGAAAGGTATGATGAGATAGAGTCTAAGATGGCACCCTTCTTGAAGTCATCTGGTTACAATGTAAAGAAAGATGTCCAATTTTTACCTATATCTGGTCTTCATGGTATTAATATGAAAACAAGAGTGGATAAGAAAGTATGTCCGTGGTGGAATGGCCAATGCTTGTTTGAAATCCTTGATACGGTTGAAGGTCCACCAAGGAATCCAAAAGATCCATTTAGGATGCCTATCATCGACAAATTCAAGGACATGGGAACGACTGTTATGGGTAAAGTTGAATCTGGCTCTGTGCGTGAGGGTGATTCCTTATGGGTAATGCCAAATAAGACTCAGGTGAAAGTTACTGCTGTAATGTGTGATGAAAATAAAGTTAAGAGCGCAGGACCGGGTGAAAATCTTCGTGTTAGAATATCTGGAATTGAAGAAGAAGAAATAATGTCTGGGTTTGTACTGTCAAGCATTGCAAAACCAATACCCGCGGTTTCCGAGTTTGTTGCACAGCTACAGATTCTTGAGCTGCTGGATAATGCAATATTTACAGCTGGATATAAGGCCGTACTTCACATTCATGCGGTTGTTGAAGAATGTGAGATCATAGAGCTGCTTCAGCAGATTGATCCGAAGACTAGGAAACCTATGAAAAAGAAGGTTCTTTTCGTGAAGAATGGTGCAGTTATTTTGTGCCGCGTCCAGGTCAATAACTTGATCTGCATTGAGAAATTTTCTGAGGTTCCTCAGCTTGGAAGATTTACACTTCGAACTGAAGGGAAGACAGTTGCCGTAGGAAAGGTCACTGATATTCCGGCTGCAAGCAATTAA 1260 41.51 AGKSTIGGQILFLSDQVDERTIQKYEKEAKDKSRESWYMAYIMDTNEEERVKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGYEKGGQTREHVLLAKTLGVAKLLVVVNKMDDPTVKWSKERYDEIESKMAPFLKSSGYNVKKDVQFLPISGLHGINMKTRVDKKVCPWWNGQCLFEILDTVEGPPRNPKDPFRMPIIDKFKDMGTTVMGKVESGSVREGDSLWVMPNKTQVKVTAVMCDENKVKSAGPGENLRVRISGIEEEEIMSGFVLSSIAKPIPAVSEFVAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIIELLQQIDPKTRKPMKKKVLFVKNGAVILCRVQVNNLICIEKFSEVPQLGRFTLRTEGKTVAVGKVTDIPAASN 419
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2068512 2079931 - Lag0024318.1 Lac10g0273 582804

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g0273 419 FunFam Eukaryotic peptide chain release factor GTP-binding subunit ERF3A 216 302 - -
Lac10g0273 419 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 309 414 IPR009001 -
Lac10g0273 419 Gene3D - 1 211 IPR027417 -
Lac10g0273 419 FunFam Eukaryotic peptide chain release factor GTP-binding subunit ERF3A 1 212 - -
Lac10g0273 419 Pfam Elongation factor Tu domain 2 232 298 IPR004161 GO:0005525(InterPro)
Lac10g0273 419 Pfam Elongation factor Tu GTP binding domain 1 193 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Lac10g0273 419 CDD eRF3_C_III 306 414 - -
Lac10g0273 419 Gene3D Translation factors 217 301 - -
Lac10g0273 419 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 44 59 IPR031157 -
Lac10g0273 419 PANTHER TRANSLATION FACTOR 1 412 IPR050100 GO:0003747(PANTHER)|GO:0003924(PANTHER)|GO:0006412(PANTHER)|GO:0018444(PANTHER)
Lac10g0273 419 Gene3D Translation factors 307 415 - -
Lac10g0273 419 Pfam GTP-eEF1A C-terminal domain-like 310 412 IPR054696 -
Lac10g0273 419 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 223 IPR027417 -
Lac10g0273 419 FunFam Putative translation elongation/initiation factor family protein 306 415 - -
Lac10g0273 419 CDD EF1_alpha 1 213 - -
Lac10g0273 419 SUPERFAMILY Translation proteins 212 304 IPR009000 -
Lac10g0273 419 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 1 217 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Lac10g0273 419 CDD eRF3_II 219 300 - -
Lac10g0273 419 PRINTS GTP-binding elongation factor signature 51 59 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Lac10g0273 419 PRINTS GTP-binding elongation factor signature 131 140 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Lac10g0273 419 PRINTS GTP-binding elongation factor signature 87 98 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Lac10g0273 419 PRINTS GTP-binding elongation factor signature 71 81 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g0273 K03267 - - csv:101217809 790.03
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0273 Lac-Chr10:2068512 Lac8g2435 Lac-Chr8:42411267 2.50E-69 dispersed
Lac10g0273 Lac-Chr10:2068512 Lac9g2564 Lac-Chr9:44257201 1.90E-69 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g246 Blo04g00839 Blo16g00126 . . . Bpe13g00367 Bma06g00055 . Cmo13g01039 Cmo18g00045 . . . . . Cpe20g00140 . . . . . . . . . . . . . . . . . . . Lsi02g00219 Csa01g00700 Chy12g01412 Cme12g01846 . . Bda11g01780 . . Bpe15g00536 Bma03g00904 . Sed08g2749 . . Cma13g01003 Cma18g00058 Car13g00838 Car18g00051 Cpe09g01124 Cpe18g00872 Bhi08g01272 Tan05g2214 Cmetu12g0241 Lac10g0273 . . . Cla04g01062 Cam04g1105 Cec01g1619 Cco01g1666 Clacu04g1130 Cmu04g1114 Cre01g1415 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004032 3 3 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 1 44