Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g0281 ATGATTGGCCACCGATGGATTCGCGAAAGAGGGAGAACGGAAATTGCTGGAATTGAATGGCATAGAGCTGAATCAGAACCGAGGAAGGCGACTACTGGTTCTATACGGGTAAGGCAGATATTCCACCAGATTAATCAAGATGGTGAGAAGCAATCAGATTTTTTCACAGAGTATGGAGAAGCAAGCCGATACCAAATTCAGGAAGTTATTGGGAAAGGAAGCTATGGAGTTGTTGGTTCTGCAATTGACACCCAGACTGGTGAAAGAGTTGCTATCAAGAAAATTAATGATGTTTTTGAGCACGTGTCTGATGCCATACGCATCCTGAGAGAAGTTAAGCTTCTTCGGATGCTTCATCATCCAAATATTGTAGAGATAAAGCATATTATGCTTCCTCCCTCACAACGAGAGTTCAAAGACATATATATTGTTTTTGAGTTGATGAAGTCTGACCTTCACCACGTAATCAAGGCAAATAATAATCTCTCTCCCAAGCAGCATAAATTTTTCTTGTACCAGCTTCTCAGTGGTCTAAAATATATACATGCAGCAAATGTCCTTCATCGAGATTTGAAGCCCAAGAACATACTTGCCAATGCTGACTGCAAACTGAAGATATGTGATTTTGGGCTTGCTCGCGTATCTTTTAGTGATGCGCCATCTACTATTTTCTGGACAGATTATGTTGCAACTCGTTGGTATCGTGCTCCCGAACTCTGTGGATCATTTTTCTCGAGATATACCCCTGCTATAGATATATGGAGTATCGGATGCATATTTGCAGAAATGCTTACGGGAAAACCTTTGTTTCCTGGAAAAAATGTGGTTCATCAATTAGATCTAATTACCGATTTGTTTGGCACTCCTGATGCTGAAGCCATAGCGAAGATTCGGAATGAGAAGGCAAGGAGGTATCTTGGAAACATGCGTAAAAAACCACCAGTTCCATTCTCACGAAAGTTCCCTAATGTTGATCCATTGGCACTTCATTTACTGGAACGCCTCCTGGCCTTTGATCCCAAATGTCGTCTAACTGCTGCAGAGGCACTTGCCGATCCTTACTTCAATGGTTTCGCGAAAGCAGAACTTGAACATTCTATTCAACCAATTTCAAAACTTGAGTTTGAGTTTGAGAGGAGGAGATTATCAAAAGATGATGTTAGAGAGTTAATTTATGCAGAGATTTTAGAGTATCATCCCCAAATGCGTCAGGAATGTCTACGCGATGGAGATCAAAGTACCTTTATGTATCCAAGTGGTGTTGATCGATTTAAGCTTCAGTTTGCGCATCTGGAAGAGTTTGGTAAAAGTCAAAGAAGTCCTACACTTCAAAGGCAAAACGTTTCTTTACCTCGGGAGCGGGTTAGTCCACCTGAGCACAAGATAGCTGAGCGTAACTTTGATTTCGAAATAGGAAAAGACAAGAGTGCTCACCTCTTGAAAAGTGCTAGCATTAGTGCATCCAGGTGTGTTGGGGTGACACCAAAGGAGAAGTCTGAGGCAGGAGAAACGAGTTCTGAAGTGACAAATGAAGCAGTCGATGGCTTGTCTAAAAAAATTGCAGTCCTTCAGACTTGA 1578 41.7 MIGHRWIRERGRTEIAGIEWHRAESEPRKATTGSIRVRQIFHQINQDGEKQSDFFTEYGEASRYQIQEVIGKGSYGVVGSAIDTQTGERVAIKKINDVFEHVSDAIRILREVKLLRMLHHPNIVEIKHIMLPPSQREFKDIYIVFELMKSDLHHVIKANNNLSPKQHKFFLYQLLSGLKYIHAANVLHRDLKPKNILANADCKLKICDFGLARVSFSDAPSTIFWTDYVATRWYRAPELCGSFFSRYTPAIDIWSIGCIFAEMLTGKPLFPGKNVVHQLDLITDLFGTPDAEAIAKIRNEKARRYLGNMRKKPPVPFSRKFPNVDPLALHLLERLLAFDPKCRLTAAEALADPYFNGFAKAELEHSIQPISKLEFEFERRRLSKDDVRELIYAEILEYHPQMRQECLRDGDQSTFMYPSGVDRFKLQFAHLEEFGKSQRSPTLQRQNVSLPRERVSPPEHKIAERNFDFEIGKDKSAHLLKSASISASRCVGVTPKEKSEAGETSSEVTNEAVDGLSKKIAVLQT 525
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2129564 2135014 - Lag0024326.1 Lac10g0281 582812
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g0281 525 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 61 396 IPR050117 GO:0004674(PANTHER)|GO:0004707(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0035556(PANTHER)
Lac10g0281 525 SMART serkin_6 64 355 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac10g0281 525 SUPERFAMILY Protein kinase-like (PK-like) 60 359 IPR011009 -
Lac10g0281 525 ProSitePatterns Protein kinases ATP-binding region signature. 70 94 IPR017441 GO:0005524(InterPro)
Lac10g0281 525 Gene3D Phosphorylase Kinase; domain 1 80 401 - -
Lac10g0281 525 ProSiteProfiles Protein kinase domain profile. 64 355 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac10g0281 525 FunFam Mitogen-activated protein kinase 53 157 - -
Lac10g0281 525 CDD STKc_TDY_MAPK 63 400 - -
Lac10g0281 525 Pfam Protein kinase domain 64 355 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac10g0281 525 ProSitePatterns MAP kinase signature. 99 202 IPR003527 GO:0004707(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac10g0281 525 Gene3D Transferase(Phosphotransferase) domain 1 150 378 - -
Lac10g0281 525 FunFam Mitogen-activated protein kinase 150 378 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0281 Lac-Chr10:2129564 Lac3g0430 Lac-Chr3:3293053 4.10E-207 dispersed
Lac10g0281 Lac-Chr10:2129564 Lac3g0442 Lac-Chr3:3376850 5.10E-48 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85621 PF00069 Pkinase 1.30E-68 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g0281 - - - 0.0