Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g0287 ATGTGGTCGGCGGCCGAGCTCGGTTGCCTCCGTTCGATCCCTCCTGCCTTTGGTTGCCTCGATTTCGTCTGGTCACGTCTTCCCCCTCCGTTGGTAGCACGTGAAGGTCATATGAATATGTGGATGATGGGTTACAATGACGGCGGAGATTTGAACTTTGCTGCTGATTCATTCAATGGTCGAAAGCTTAGGCCTCTCATTCCTCGCCCTCTCTCTTCTCTTTCCACTTCCTCTTCCTCTTCCACTTCCATTAATCCTCCTTTAAACCTCATCCACACCAACGATTTCTTCTCTCAATTTCATCACATGGCGACGGTGACGGATCAGAGTAAGAGAGAGTTGAACAATGTGCCACCACCGGTGGTGGTGAGCTCGCGGTGGAATCCGACTCCGGAGCAGTTGAGGGTGCTGGAAGAATTGTACCGGCGGGGGACTCGAACCCCGTCCGCCGATCAAATTCAACACATCACTGCTCAGCTTCGCCGCTATGGTAAGATTGAAGGTAAGAATGTGTTCTACTGGTTTCAGAATCACAAAGCCAGAGAGCGACAGAAACGTCGCCGACAGATGGAATCCGCCATCACCGCCGACCACTCGGCTCGCGACGTCGAAATCCTCGAAAGGAAAGATTCAGGTTCGGGTAGGACAGTCTATGAAGTTGAACAGACCAAAAACTGGGCTCCCTCTACAAACTGCAGTACACTTCCGGAGGAATCTGTTCCAATTCAACGGGCGGCAAAAGCAAGTGTAATGGCAGCAGCAGATTGCAGGGCAGAAAATGGATGGATCCAATTCGAGGAATTACACCAAAGAAGGAATAACAACAACAACTTTGCTGAAAAGCATAGCAGCAGCAGCAATAATAACAACAATGCAGCCTCCTTGCAGTTGATGCATTGTCCGGCCGCCGCTCTCGGCGGTGGCGGTGGCGGCGGGCAGCTGATGATGAACACTGCAGCCATCACCACCACAGCCACAGTGACAACAATAATGCACCAAAAGTGTCATCATAGTAATCTTTCAGGCTTTGTTGAAGAATTAGAAGAAGAATTAGAAGAAGAAGAAGAAGAAGGATGTGGGGAATCTGAAACCCTACAACTTTTTCCTTTGTGCAGTGACAGAAGAAATGGAGAGATTATTGGAGGCAAAAATGGATGTGAAACAGTGGAAAGTTCAGGCATGAATAGTAGTAATCTGACTCCACTTCAATTCTTTGAATTCCTTCCATTGAAGAATTGA 1239 48.59 MWSAAELGCLRSIPPAFGCLDFVWSRLPPPLVAREGHMNMWMMGYNDGGDLNFAADSFNGRKLRPLIPRPLSSLSTSSSSSTSINPPLNLIHTNDFFSQFHHMATVTDQSKRELNNVPPPVVVSSRWNPTPEQLRVLEELYRRGTRTPSADQIQHITAQLRRYGKIEGKNVFYWFQNHKARERQKRRRQMESAITADHSARDVEILERKDSGSGRTVYEVEQTKNWAPSTNCSTLPEESVPIQRAAKASVMAAADCRAENGWIQFEELHQRRNNNNNFAEKHSSSSNNNNNAASLQLMHCPAAALGGGGGGGQLMMNTAAITTTATVTTIMHQKCHHSNLSGFVEELEEELEEEEEEGCGESETLQLFPLCSDRRNGEIIGGKNGCETVESSGMNSSNLTPLQFFEFLPLKN 412
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2174339 2178007 - Lag0024332.1 Lac10g0287 582818
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g0287 412 CDD homeodomain 126 186 IPR001356 GO:0003677(InterPro)
Lac10g0287 412 SMART HOX_1 122 189 IPR001356 GO:0003677(InterPro)
Lac10g0287 412 Pfam Homeodomain 125 184 IPR001356 GO:0003677(InterPro)
Lac10g0287 412 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 118 408 IPR044555 GO:0003700(InterPro)|GO:0099402(InterPro)
Lac10g0287 412 SUPERFAMILY Homeodomain-like 125 191 IPR009057 -
Lac10g0287 412 Gene3D - 124 191 - -
Lac10g0287 412 FunFam WUSCHEL-related homeobox 4 124 191 - -
Lac10g0287 412 ProSiteProfiles 'Homeobox' domain profile. 130 185 IPR001356 GO:0003677(InterPro)
Lac10g0287 412 Coils Coil 337 357 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0287 Lac-Chr10:2174339 Lac7g2699 Lac-Chr7:46038073 1.40E-21 dispersed
Lac1g2996 Lac-Chr1:50648044 Lac10g0287 Lac-Chr10:2174339 7.40E-23 transposed
Lac1g3374 Lac-Chr1:53346314 Lac10g0287 Lac-Chr10:2174339 4.70E-14 transposed
Lac6g0285 Lac-Chr6:2324237 Lac10g0287 Lac-Chr10:2174339 4.00E-24 transposed
Lac8g2899 Lac-Chr8:46139780 Lac10g0287 Lac-Chr10:2174339 2.00E-22 transposed
Lac9g2529 Lac-Chr9:43962784 Lac10g0287 Lac-Chr10:2174339 6.30E-23 transposed
Lac10g0287 Lac-Chr10:2174339 Lac3g0424 Lac-Chr3:3239069 2.40E-45 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22716 PF00046 Homeodomain 1.70E-19 CL0123 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g0287 - - - 0.0