Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g0291 ATGGGAGATTCACCAAAAAGTCCAGAGAGCGGCGGAGGGGAAGGCCGTTCTTCTTCTTCCATAATGGAGAGCTTATTAGGTCTTCTTCGTATTCGGATCATTCGCGGCGTCAACCTTGCCGTTCGTGACGTTCGCAGCAGCGATCCTTACATTGTCGTTAAAATGTCCAAGCAGAAATTGAAAACCCGTGTGATAAAGAAGGATATTAATCCAGAATGGAACGAGGACCTTACTCTTTCTGTTACAGATCCCAACGTTTCAGTCAAGCTGACGGTGTACGACCACGACACGTTTAGCATGGACGACAAGATGGGAGATGCAGAGTTCGAGATAGGGCCATACATAGAAGCACTGAAGATGAACTTATCAGGGCTACCAAGTGGAACCATAGTGACTCGAGTGCAACCAAGCAGGCAAAATTGCCTAGCCGAAGAGAGCGCCATCGTGTGGCTAGACGGCAAGGTCATTCAAAACATATGCCTTCGCTTGCGCAACGTCGAGTGTGGCGAAGTCGAAATCCAATTGCAATGGATCGATCTCCCTGGTTCTAAAGGTTTGTAA 561 47.95 MGDSPKSPESGGGEGRSSSSIMESLLGLLRIRIIRGVNLAVRDVRSSDPYIVVKMSKQKLKTRVIKKDINPEWNEDLTLSVTDPNVSVKLTVYDHDTFSMDDKMGDAEFEIGPYIEALKMNLSGLPSGTIVTRVQPSRQNCLAEESAIVWLDGKVIQNICLRLRNVECGEVEIQLQWIDLPGSKGL 186
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
10 2220391 2221778 + Lag0024336.1 Lac10g0291 582822
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lac10g0291 186 Gene3D C2 domain 23 184 IPR035892 -
Lac10g0291 186 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 27 165 IPR035892 -
Lac10g0291 186 ProSiteProfiles C2 domain profile. 10 127 IPR000008 -
Lac10g0291 186 Pfam C2 domain 27 113 IPR000008 -
Lac10g0291 186 CDD C2_ArfGAP 26 169 - -
Lac10g0291 186 SMART C2_3c 28 123 IPR000008 -
Lac10g0291 186 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4 22 184 IPR044562 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0291 Lac-Chr10:2220391 Lac1g3587 Lac-Chr1:55122436 4.80E-33 dispersed
Lac11g0239 Lac-Chr11:2362220 Lac10g0291 Lac-Chr10:2220391 1.90E-65 transposed
Lac13g1421 Lac-Chr13:13855316 Lac10g0291 Lac-Chr10:2220391 1.80E-51 transposed
Lac8g1626 Lac-Chr8:34247575 Lac10g0291 Lac-Chr10:2220391 1.40E-58 transposed
Lac10g0291 Lac-Chr10:2220391 Lac3g0420 Lac-Chr3:3189914 4.60E-68 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g0291 - - - 0.0