Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac10g0291 | ATGGGAGATTCACCAAAAAGTCCAGAGAGCGGCGGAGGGGAAGGCCGTTCTTCTTCTTCCATAATGGAGAGCTTATTAGGTCTTCTTCGTATTCGGATCATTCGCGGCGTCAACCTTGCCGTTCGTGACGTTCGCAGCAGCGATCCTTACATTGTCGTTAAAATGTCCAAGCAGAAATTGAAAACCCGTGTGATAAAGAAGGATATTAATCCAGAATGGAACGAGGACCTTACTCTTTCTGTTACAGATCCCAACGTTTCAGTCAAGCTGACGGTGTACGACCACGACACGTTTAGCATGGACGACAAGATGGGAGATGCAGAGTTCGAGATAGGGCCATACATAGAAGCACTGAAGATGAACTTATCAGGGCTACCAAGTGGAACCATAGTGACTCGAGTGCAACCAAGCAGGCAAAATTGCCTAGCCGAAGAGAGCGCCATCGTGTGGCTAGACGGCAAGGTCATTCAAAACATATGCCTTCGCTTGCGCAACGTCGAGTGTGGCGAAGTCGAAATCCAATTGCAATGGATCGATCTCCCTGGTTCTAAAGGTTTGTAA | 561 | 47.95 | MGDSPKSPESGGGEGRSSSSIMESLLGLLRIRIIRGVNLAVRDVRSSDPYIVVKMSKQKLKTRVIKKDINPEWNEDLTLSVTDPNVSVKLTVYDHDTFSMDDKMGDAEFEIGPYIEALKMNLSGLPSGTIVTRVQPSRQNCLAEESAIVWLDGKVIQNICLRLRNVECGEVEIQLQWIDLPGSKGL | 186 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 10 | 2220391 | 2221778 | + | Lag0024336.1 | Lac10g0291 | 582822 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac10g0291 | 186 | Gene3D | C2 domain | 23 | 184 | IPR035892 | - | |
| Lac10g0291 | 186 | SUPERFAMILY | C2 domain (Calcium/lipid-binding domain, CaLB) | 27 | 165 | IPR035892 | - | |
| Lac10g0291 | 186 | ProSiteProfiles | C2 domain profile. | 10 | 127 | IPR000008 | - | |
| Lac10g0291 | 186 | Pfam | C2 domain | 27 | 113 | IPR000008 | - | |
| Lac10g0291 | 186 | CDD | C2_ArfGAP | 26 | 169 | - | - | |
| Lac10g0291 | 186 | SMART | C2_3c | 28 | 123 | IPR000008 | - | |
| Lac10g0291 | 186 | PANTHER | PROTEIN C2-DOMAIN ABA-RELATED 4 | 22 | 184 | IPR044562 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac10g0291 | Lac-Chr10:2220391 | Lac1g3587 | Lac-Chr1:55122436 | 4.80E-33 | dispersed | |
| Lac11g0239 | Lac-Chr11:2362220 | Lac10g0291 | Lac-Chr10:2220391 | 1.90E-65 | transposed | |
| Lac13g1421 | Lac-Chr13:13855316 | Lac10g0291 | Lac-Chr10:2220391 | 1.80E-51 | transposed | |
| Lac8g1626 | Lac-Chr8:34247575 | Lac10g0291 | Lac-Chr10:2220391 | 1.40E-58 | transposed | |
| Lac10g0291 | Lac-Chr10:2220391 | Lac3g0420 | Lac-Chr3:3189914 | 4.60E-68 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lac10g0291 | - | - | - | 0.0 |