Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g0300 ATGCCGACCCAGATGCCAACTCGTCTGCTTTCTCTTTCTCTCTCGCTTCTGGGTTTCTTTCTTCTACTCCCCACTGCCAAACCAGATCTTGCTTCTGATAGAACAGCTCTTTTGGCCCTTCGTTCCGCTGTTGGTGGCCGAACTCTTCTGCTTTGGAATGTCACTATTCAGAGCCCCTGTTCTTGGCCTGGTATTCAATGCGAGGATAATCGTGTTACTATCCTTCGTCTTCCCGGCGATGCGCTTTCCGGCCAATTGCCGGTTGGGATTTTTGGGAACTTGACTCACCTTCGCACTCTCAGCCTTCGCCTCAACGCCCTTTCCGGTCAGCTCCCCTCAGATCTCTCCGCCTGCATTAATCTTCGCAACCTCTATTTGCAAGGTAATGGGTTTTCAGGCCCTGTCCCTGATTTCTTGTTCCGGCTTCCTGACCTTGTTCGCCTTAATTTGGCTTCCAATAACTTTTCTGGGGAGATCTCTCCGGGGTTCAACAATTTTACCCGTCTTAGGACCTTGTTTCTTGAAAATAATCACCTCTCTGGGTCTATTCCGGACTTGAAGATCCCTCTGGATCAGTTCAATGTTTCTAACAATCAATTAAATGGGTCGGTTCCAAAGGGATTGCAGTCGTTTTCTTCGAGTTCGTTTTTGGGTAATTCTCTCTGTGGGCGTCCTCTTGAGGCTTGCGCTGGTGATGCTACTGTGCCGACAGGGGAGGTTAGGGACATTGATGACTCTGGACACAAGAAAAAGCTCTCCGGGGGAGCCATTGCTGGGATTGTCATTGGATCTGTACTGGGTTTGATATTGATACTTGTAATCTTAATGCTTTTGTGCCGAAAGAAGAGTGCAAAGCAGACAAGTTCAGTCGATGTAGCCACAGTGAAACATCCTGAAGTTGAAATTCAGGGCGGTAAGTCAGCTGGGGAGATTGAAAATGGCGGTTATGGTAATGGTTATACTGTGCCGGCCACGACCGCTGCTGCTGCAACAGTGGCAGCGGGGGCTGCAAAGGGGGAAGTGAATGGCACTGGAACTGGGTCTAAAAAATTGGTGTTTTTTGGTAATGCTGCGAGGGTATTTGATTTGGAGGATCTTTTGAGAGCTTCAGCAGAAGTGTTGGGGAAAGGAACTTTTGGGACTGCTTACAAAGCTGTTCTGGAAGTGGGTTCTGTCGTGGCTGTGAAGAGATTGAAGGATGTTACCATAACAGAGAGGGAATTCAGAGAAAAGATTGAGGCTGTTGGATCTATGGATCATGAAAACTTGGTCCCTCTCAGGGCTTACTATTTCAGTAGGGATGAGAAGCTTCTTGTCTATGATTACATGGCCATGGGAAGCTTATCTGCTCTTTTACATGGAAACAGAGGAGCTGGTAGGACTCCATTGAACTGGGAGATCAGATCTGGAATTGCCCTTGGAGCTGCTCGTGGTGTTGAATTTCTGCATTCTCAAGGCCCTAATGTTTCCCATGGAAACATAAAATCATCCAATATTCTTCTAACCAAATCCTATGATGCTCGAGTCTCCGATTTCGGTTTAGCACATCTTGTTGGACCACCTTCCAGCCCCAACAGAGTTGCTGGATACCGTGCACCAGAGGTCACTGATCCTCGTAAAGTATCCCAGAAGGCTGATGTCTATAGCTTTGGCGTATTGCTCTTGGAGCTTTTGACAGGAAAGGCTCCTACTCACTCCCTTTTAAACGAGGAAGGAGTCGATTTACCTAGATGGGTGCAGTCAGTTGTTAGGGAAGAGTGGACATCCGAAGTTTTCGACCTCGAGCTTCTTAGGTACCAAAACGTCGAGGAGGAGATGGTTCAACTGTTGCAGCTTGCAGTTGATTGCGCAGCTCAGTATCCTGATAAGCGTCCATCAATGTCCGAAGTCACAAGGCGTATAGAAGAGCTTCGCCAATCCAGCATCCACGAAGCTGTCAATCCACAACCTGCTCATGAGTCGGCCGACGCTAGGTGA 1977 48.0 MPTQMPTRLLSLSLSLLGFFLLLPTAKPDLASDRTALLALRSAVGGRTLLLWNVTIQSPCSWPGIQCEDNRVTILRLPGDALSGQLPVGIFGNLTHLRTLSLRLNALSGQLPSDLSACINLRNLYLQGNGFSGPVPDFLFRLPDLVRLNLASNNFSGEISPGFNNFTRLRTLFLENNHLSGSIPDLKIPLDQFNVSNNQLNGSVPKGLQSFSSSSFLGNSLCGRPLEACAGDATVPTGEVRDIDDSGHKKKLSGGAIAGIVIGSVLGLILILVILMLLCRKKSAKQTSSVDVATVKHPEVEIQGGKSAGEIENGGYGNGYTVPATTAAAATVAAGAAKGEVNGTGTGSKKLVFFGNAARVFDLEDLLRASAEVLGKGTFGTAYKAVLEVGSVVAVKRLKDVTITEREFREKIEAVGSMDHENLVPLRAYYFSRDEKLLVYDYMAMGSLSALLHGNRGAGRTPLNWEIRSGIALGAARGVEFLHSQGPNVSHGNIKSSNILLTKSYDARVSDFGLAHLVGPPSSPNRVAGYRAPEVTDPRKVSQKADVYSFGVLLLELLTGKAPTHSLLNEEGVDLPRWVQSVVREEWTSEVFDLELLRYQNVEEEMVQLLQLAVDCAAQYPDKRPSMSEVTRRIEELRQSSIHEAVNPQPAHESADAR 658
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2302278 2304912 - Lag0024345.1 Lac10g0300 582831
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g0300 658 Gene3D Ribonuclease Inhibitor 190 229 IPR032675 -
Lac10g0300 658 FunFam Probable inactive receptor kinase RLK902 30 187 - -
Lac10g0300 658 PANTHER OS05G0588300 PROTEIN 16 650 IPR050994 -
Lac10g0300 658 MobiDBLite consensus disorder prediction 639 658 - -
Lac10g0300 658 Pfam Leucine Rich Repeat 145 166 IPR001611 GO:0005515(InterPro)
Lac10g0300 658 Pfam Leucine Rich Repeat 168 185 IPR001611 GO:0005515(InterPro)
Lac10g0300 658 Pfam Leucine Rich Repeat 120 142 IPR001611 GO:0005515(InterPro)
Lac10g0300 658 Gene3D Ribonuclease Inhibitor 30 187 IPR032675 -
Lac10g0300 658 FunFam Probable inactive receptor kinase At1g48480 443 645 - -
Lac10g0300 658 Pfam Protein kinase domain 372 631 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac10g0300 658 Gene3D Phosphorylase Kinase; domain 1 340 442 - -
Lac10g0300 658 Gene3D Transferase(Phosphotransferase) domain 1 443 654 - -
Lac10g0300 658 SUPERFAMILY L domain-like 32 214 - -
Lac10g0300 658 Pfam Leucine rich repeat N-terminal domain 31 67 IPR013210 -
Lac10g0300 658 CDD STKc_IRAK 374 637 - -
Lac10g0300 658 FunFam pollen receptor-like kinase 1 337 442 - -
Lac10g0300 658 ProSitePatterns Protein kinases ATP-binding region signature. 374 396 IPR017441 GO:0005524(InterPro)
Lac10g0300 658 ProSiteProfiles Protein kinase domain profile. 368 646 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac10g0300 658 SUPERFAMILY Protein kinase-like (PK-like) 372 634 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0300 Lac-Chr10:2302278 Lac3g0862 Lac-Chr3:6916549 1.40E-132 dispersed
Lac11g0217 Lac-Chr11:2147002 Lac10g0300 Lac-Chr10:2302278 1.10E-163 transposed
Lac2g1493 Lac-Chr2:12915958 Lac10g0300 Lac-Chr10:2302278 5.80E-53 transposed
Lac8g1972 Lac-Chr8:38157274 Lac10g0300 Lac-Chr10:2302278 3.50E-128 transposed
Lac10g0300 Lac-Chr10:2302278 Lac3g0397 Lac-Chr3:2989084 8.40E-64 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85623 PF00069 Pkinase 2.80E-38 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g0300 - - - 0.0