Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g0307 ATGGCTCTGGTCCGTGATCGCCGCCAGTTGAACCTCCGCCTCCCCGACCTCTCCGACTGCCGTCCCCGCTTCCCCCTCCCTCTCCCTCCCTCCTCCGCCCCCGCCCCTGCCGCCTCCTCCGCCATCTCCTCCTCCGACCTCGACAGGCTCCAAGTCCTCGGCCACGGCAACGGAGGCACCGTCTACAAAGTCCGCCACAAGCGCACCTCCACCACCTACGCTCTCAAGGTCGTCCACGGCGACTGCGATCCCACCGTCCGCCGCCAGGTTTTCAGAGAGATGGAGATTCTCCGCCGTACCGACTCTCCCTACGTCGTCCAGTGCCATGGAATCTTCGAGAAGCCGTCTGGAGATGTCACGATCTTGATGGAGTATATGGATCTAGGATCGCTCGATTCGCTCTTGAAGAAGAACTCGACGTTGTCCGAGGCCACGCTCGCTCACGTGTCGCGTCAGGTTCTTAACGGCCTTCACTACCTTCACACTCACAAGATCATTCATCGCGATATTAAACCGTCGAATCTGTTGGTGAATAAGAATATGGAGGTTAAGATTGCCGATTTTGGAGTGAGTAAGATCATGTGCAGGACTCTGGATGCTTGTAATTCCTACGTCGGAACCTGCGCTTATATGAGTCCGGAGCGGTTCGATCCGGAGACTTACGGCGGAAATTACAACGGTTACGCCGGCGACATATGGAGTTTGGGGCTTACTCTTCTGGAGCTCTATTTAGGTCATTTTCCTTTTCTTCCGCCTGGTCAGAGACCGGATTGGGCGACTCTGATGTGTGCGATTTGCTTCGGCGAGCCGCCGACGCTGCCGGAGGATGCGTCGGAGGAGTTTCGGAGCTTCGTCGAGTGTTGCTTGCAGAAGGAATCGAGCAAGCGGTGGACGGCGGCGCAATTGTTGACGCATCCGTTTGTGTGTAAGGAATCGAGATCCGATCGGTGA 951 56.99 MALVRDRRQLNLRLPDLSDCRPRFPLPLPPSSAPAPAASSAISSSDLDRLQVLGHGNGGTVYKVRHKRTSTTYALKVVHGDCDPTVRRQVFREMEILRRTDSPYVVQCHGIFEKPSGDVTILMEYMDLGSLDSLLKKNSTLSEATLAHVSRQVLNGLHYLHTHKIIHRDIKPSNLLVNKNMEVKIADFGVSKIMCRTLDACNSYVGTCAYMSPERFDPETYGGNYNGYAGDIWSLGLTLLELYLGHFPFLPPGQRPDWATLMCAICFGEPPTLPEDASEEFRSFVECCLQKESSKRWTAAQLLTHPFVCKESRSDR 316
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2348812 2349762 - Lag0024352.1 Lac10g0307 582838

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g0307 316 SUPERFAMILY Protein kinase-like (PK-like) 46 310 IPR011009 -
Lac10g0307 316 ProSitePatterns Serine/Threonine protein kinases active-site signature. 165 177 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac10g0307 316 PANTHER DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED 38 311 - GO:0000165(PANTHER)|GO:0004708(PANTHER)
Lac10g0307 316 SMART serkin_6 47 308 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac10g0307 316 FunFam Mitogen-activated protein kinase 2 128 316 - -
Lac10g0307 316 Gene3D Phosphorylase Kinase; domain 1 33 127 - -
Lac10g0307 316 Gene3D Transferase(Phosphotransferase) domain 1 129 316 - -
Lac10g0307 316 FunFam Mitogen-activated protein kinase kinase 29 123 - -
Lac10g0307 316 Pfam Protein kinase domain 49 308 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac10g0307 316 ProSitePatterns Protein kinases ATP-binding region signature. 53 76 IPR017441 GO:0005524(InterPro)
Lac10g0307 316 CDD PKc_MAPKK_plant_like 46 308 - -
Lac10g0307 316 ProSiteProfiles Protein kinase domain profile. 47 308 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g0307 K20604 - - csv:101203133 583.948
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0307 Lac-Chr10:2348812 Lac12g2499 Lac-Chr12:41993338 3.90E-83 dispersed
Lac10g0307 Lac-Chr10:2348812 Lac6g3082 Lac-Chr6:48366392 1.30E-62 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac3g1054 . 160 470 MAP Kinase Kinase Gene Family AT4G26070 68.1 3.3e-128 455.7
Lac6g3082 . 27 351 MAP Kinase Kinase Gene Family AT4G26070 67.5 8.0e-127 451.1
Lac6g3038 . 16 351 MAP Kinase Kinase Gene Family AT4G26070 54.7 2.2e-108 389.8
Lac3g1054 . 133 443 MAP Kinase Kinase Gene Family AT4G29810 67.5 3.6e-127 452.2
Lac6g3082 . 10 325 MAP Kinase Kinase Gene Family AT4G29810 64.8 1.8e-118 423.3
Lac6g3038 . 10 324 MAP Kinase Kinase Gene Family AT4G29810 59.4 8.9e-110 394.4
Lac8g0237 . 36 518 MAP Kinase Kinase Gene Family AT5G40440 79.9 2.2e-229 792.3
Lac12g2499 . 1 374 MAP Kinase Kinase Gene Family AT1G51660 69.1 1.1e-126 450.7
Lac10g0307 . 45 314 MAP Kinase Kinase Gene Family AT1G51660 55.6 5.9e-83 305.4
Lac12g2499 . 1 374 MAP Kinase Kinase Gene Family AT3G21220 67.7 4.8e-127 451.8
Lac10g0307 . 40 310 MAP Kinase Kinase Gene Family AT3G21220 55.4 1.0e-84 311.2
Lac6g3038 . 1 354 MAP Kinase Kinase Gene Family AT5G56580 84.2 1.1e-171 600.1
Lac6g3082 . 1 340 MAP Kinase Kinase Gene Family AT5G56580 57.3 1.4e-110 397.1
Lac3g1054 . 139 469 MAP Kinase Kinase Gene Family AT5G56580 56.8 1.9e-110 396.7
Lac10g0307 . 1 308 MAP Kinase Kinase Gene Family AT1G18350 63.3 6.4e-107 384.8
Lac12g2499 . 76 339 MAP Kinase Kinase Gene Family AT1G18350 52.8 9.0e-77 284.6
Lac10g0307 . 1 296 MAP Kinase Kinase Gene Family AT3G06230 51.6 3.1e-79 292.7
Lac10g0307 . 1 308 MAP Kinase Kinase Gene Family AT1G73500 66.7 1.4e-114 410.2
Lac12g2499 . 80 339 MAP Kinase Kinase Gene Family AT1G73500 53.2 1.8e-77 287.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011011 1 1 0 0 0 1 2 1 1 1 1 1 2 1 1 1 1 1 2 1 1 1 1 1 1 1 1 2 1 1 31
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85624 PF00069 Pkinase 6.10E-65 CL0016 Lac PK