Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g0312 ATGCTGGCTGATCTCTCTTCTTCTTCTCCTTCACTTCCTTGTTTTGAGCCTTTGTCTAATTGCTTTGAAAACAATGGAACCAATAACAAAAGAAAGAGAAGACCTGCTGGAACTCCAGACCCAGATGCGGAAGTGGTTTCTCTCTCTCCGAAAACCCTATTGGAATCGGATCGTTACGTATGTGAGATCTGCAACCAGGGGTTCCAGAGAGATCAGAATCTACAGATGCATCGACGGCGACACAAGGTGCCGTGGAAGCTGTTGAAGCGGACCGAGGCGGCGGCCGCGGTGAGAAAACGGGTGTTCGTTTGCCCGGAGCCGAGCTGCTTACACCATAACCCTACTCATGCTTTGGGGGATTTGGTGGGAATAAAGAAGCACTTTAGAAGAAAGCATAGTAACCATAAGCAATGGGTTTGTGAAAAATGCTCCAAAGGATATGCTGTTCAATCTGATTACAAAGCCCATCTCAAAACCTGTGGAACCAGAGGACATTCGTGTGACTGTGGTCGAGTTTTCTCCAGGGTGGAGAGTTTCATAGAACATCAAGATACTTGCAAATTGGGTGGTCATCAACAATCAGATCAAAAAATCCCATCTTTACAACCACCACCACCATGTTTATCAAGAACAGCTTCAAGTCCAACTCCAAGCCCTTCTTCAGATACAAATTTCAGCTTCTTAAACCAAAACCACACATCAACAACAACAACAACAAGATCTCCTCAAAAAGCTATTAGCTATCATCAAAATTTGGATCTTCAACTTTCCACCACTTCAACTTCCATTCATGTTTCAGTTTCTCCAAAAAGACATGAAAATCACTCAACCCATTTGCAGCTTTCAATTGGTTCTTGCAATTATGGTGAGAAAAATGAGAACATTAATATCAATAATGATGATCATCATCACATGATCAGTTGTGATGAGAAAATTGGAAGTGGGTTAGGTTTCTTGAGGCTGAAAGAGGAAGCCAAGGAGCAAATGAGAGTGGCAATGGAAGAGAAGGCAGTGGCTGAAGAAGCAAGAAATGAAGCAAAGAGGCAGATTGAATTGGCTGAGAAAGAGTTGGCCAATGCCAAGAGATTGAGACAACAAGCTCAAGCTGAGTTACAAAGAGCTCTTGCTTTGAAAGAACATGCCATCAAGAAAATCAACTCCACCGTCCTCCAAATCACTTGCCAAGTTTGTAGGCAACATTTTCATCAATTGCCCAAAATTTGA 1224 42.73 MLADLSSSSPSLPCFEPLSNCFENNGTNNKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRTEAAAAVRKRVFVCPEPSCLHHNPTHALGDLVGIKKHFRRKHSNHKQWVCEKCSKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDTCKLGGHQQSDQKIPSLQPPPPCLSRTASSPTPSPSSDTNFSFLNQNHTSTTTTTRSPQKAISYHQNLDLQLSTTSTSIHVSVSPKRHENHSTHLQLSIGSCNYGEKNENININNDDHHHMISCDEKIGSGLGFLRLKEEAKEQMRVAMEEKAVAEEARNEAKRQIELAEKELANAKRLRQQAQAELQRALALKEHAIKKINSTVLQITCQVCRQHFHQLPKI 407
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2411785 2414199 - Lag0024357.1 Lac10g0312 582843
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g0312 407 Gene3D Classic Zinc Finger 37 102 - -
Lac10g0312 407 FunFam protein indeterminate-domain 12-like 38 108 - -
Lac10g0312 407 SUPERFAMILY beta-beta-alpha zinc fingers 58 158 IPR036236 -
Lac10g0312 407 ProSiteProfiles Zinc finger C2H2 type domain profile. 59 81 IPR013087 -
Lac10g0312 407 MobiDBLite consensus disorder prediction 25 46 - -
Lac10g0312 407 Pfam Zinc finger, C2H2 type 59 81 IPR013087 -
Lac10g0312 407 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 24 371 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Lac10g0312 407 SMART c2h2final6 138 165 IPR013087 -
Lac10g0312 407 SMART c2h2final6 102 132 IPR013087 -
Lac10g0312 407 SMART c2h2final6 59 81 IPR013087 -
Lac10g0312 407 Coils Coil 322 384 - -
Lac10g0312 407 MobiDBLite consensus disorder prediction 190 243 - -
Lac10g0312 407 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 98 132 - -
Lac10g0312 407 Gene3D Classic Zinc Finger 123 200 - -
Lac10g0312 407 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 137 161 - -
Lac10g0312 407 ProSitePatterns Zinc finger C2H2 type domain signature. 61 81 IPR013087 -
Lac10g0312 407 MobiDBLite consensus disorder prediction 213 243 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0015 Lac-Chr10:237786 Lac10g0312 Lac-Chr10:2411785 6.70E-105 dispersed
Lac10g0312 Lac-Chr10:2411785 Lac8g2196 Lac-Chr8:40265888 2.00E-92 dispersed
Lac10g0312 Lac-Chr10:2411785 Lac6g0394 Lac-Chr6:3228385 1.20E-60 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22720 PF00096 zf-C2H2 0.0037 CL0361 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g0312 K25871 - csv:101210748 621.698