Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g0317 ATGGAGTTGGAGAACACGCGGGCTGAGTGGATGAGTGGCAGCCTTAGGCTTCAGGCTGAAGCCTTACCTGGCACTACATCTACATCAATAGGAAGAATCTGTGGAGCCAATCATTACCGAACTTTCTTTCTTTCCTCATCATCGCCGCTCCTGAGAGAATTCTCTGTTCGGAGCCACCAGAGGCGAAGGCGACTTCTTAAGAAACCGCAGCGAATCGATCGTCGTAGCGGTCTGTCAAATCCGAGTCCAAACATGAACGAGAAGGCCTCCGTCTCTAAGGAGCTCGAAGCCAAACATACTAAGATCTTAGAAGGTCTTCTCAAGCTTCCAGAAAATAGGGAATGTGCCGACTGCCGGAGCAAGGCACCACGATGGGCAAGTGTAAACCTTGGAATTTTTATATGCTTGCAATGCTCGGGTATTCATAGGAGTCTTGGAGTACATATTTCAAAGGTACGGTCTACTACTCTTGATACATGGCTCCCAGAACAGGTTGCTTTTATGCAGTCTATGGGAAATGAGAGGTCAAATTGTTACTGGGAAGCTGAACTACCACCAAATTTTGATAGGAGAGGGAATCAAATGTTCATTCGTGCCAAGTACGAAGAGAAAAAGTGGGTTCCTAAGAATAATAGAACATACCCAACTCCACAATTAGGTGCAATGAGAAGTATTTATTGTGATTCGGTTGAAACTGGACACAAAAGCTCTATTTCAAAGAAGATGAGGAGCTTTTCTCTTGAGGAAGAGATTCTCACTCAGCATGTGGCGAAAGCAACTCCCACAGTAGCAAAAGCACGCGGGAATTCTTTAGATCTGAAGAATCATCTGATTGCTTCAGCTCCTCCAAGAGGGCCTTCTTTGGTGAAAGAAATCGATACATCCAAAAGTAATACAAATGGATCCCCAGATCTCTTCAAATATGTCCAAGATGCAAAACAGGACTGCTCTGGCGTAATTCCAGCTCGTTGGGCAACTTTCGACTGTAAGTTCCCATAA 999 44.94 MELENTRAEWMSGSLRLQAEALPGTTSTSIGRICGANHYRTFFLSSSSPLLREFSVRSHQRRRRLLKKPQRIDRRSGLSNPSPNMNEKASVSKELEAKHTKILEGLLKLPENRECADCRSKAPRWASVNLGIFICLQCSGIHRSLGVHISKVRSTTLDTWLPEQVAFMQSMGNERSNCYWEAELPPNFDRRGNQMFIRAKYEEKKWVPKNNRTYPTPQLGAMRSIYCDSVETGHKSSISKKMRSFSLEEEILTQHVAKATPTVAKARGNSLDLKNHLIASAPPRGPSLVKEIDTSKSNTNGSPDLFKYVQDAKQDCSGVIPARWATFDCKFP 332
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2469204 2474356 - Lag0024362.1 Lac10g0317 582848

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g0317 332 SMART arf_gap_3 89 214 IPR001164 GO:0005096(InterPro)
Lac10g0317 332 Gene3D Arf GTPase activating protein 82 215 IPR038508 -
Lac10g0317 332 Pfam Putative GTPase activating protein for Arf 101 208 IPR001164 GO:0005096(InterPro)
Lac10g0317 332 MobiDBLite consensus disorder prediction 75 89 - -
Lac10g0317 332 FunFam stromal membrane-associated protein 1 isoform X1 85 212 - -
Lac10g0317 332 MobiDBLite consensus disorder prediction 70 91 - -
Lac10g0317 332 PRINTS HIV Rev interacting protein signature 152 173 IPR001164 GO:0005096(InterPro)
Lac10g0317 332 PRINTS HIV Rev interacting protein signature 131 148 IPR001164 GO:0005096(InterPro)
Lac10g0317 332 PRINTS HIV Rev interacting protein signature 112 131 IPR001164 GO:0005096(InterPro)
Lac10g0317 332 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD5 85 299 IPR044520 GO:0005096(InterPro)
Lac10g0317 332 CDD ArfGap 103 201 - -
Lac10g0317 332 ProSiteProfiles ARF GTPase-activating proteins domain profile. 100 214 IPR001164 GO:0005096(InterPro)
Lac10g0317 332 SUPERFAMILY ArfGap/RecO-like zinc finger 99 209 IPR037278 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g0317 K12486 - - csv:101211239 432.18
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0317 Lac-Chr10:2469204 Lac2g1309 Lac-Chr2:10886756 9.40E-56 dispersed
Lac10g0317 Lac-Chr10:2469204 Lac1g3587 Lac-Chr1:55122436 8.00E-23 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g969 . . . . . . . . Cmo13g01001 Cmo18g00070 . . . . . Cpe20g00174 . . . . . . . . . . . . . . . . . . . Lsi02g00263 Csa01g00743 Chy12g01370 Cme12g01802 . . . . . . . . Sed08g2788 . . Cma13g00966 Cma18g00093 Car13g00800 Car18g00083 Cpe09g01097 . Bhi08g01335 Tan05g2152 Cmetu12g1789 Lac10g0317 Hepe07g2326 . . Cla01g01468 Cam01g1537 Cec01g1576 Cco01g1624 Clacu01g1561 Cmu01g1451 Cre01g1373 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011457 0 1 0 0 1 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 0 1 1 1 1 1 2 2 1 31