Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac10g0329 | ATGACGAATCAGCTGAGTAGTGGAAACCGAAGGCGGGACTTCACAAACAACCATAAGTGGAAGAAGCATAGGATAATCCAATCAGCTGAGGAAGAGATTGAATCAAAGTTTGGATTCAATCTCTTCTCTAAAGGCGACAAGAGGCTTGGATGGTTGCTCACTTTCACTCCTTCATCTTGTAAGGATGAGGATACTGAAAAAATCTACAGCTGTATCGATCTTTATTTTGTCACACAGGATGGCAGCAGTTTCAAATCAAAATATAAGTTTCGTCCTTACTTTTATGCAGCCACAAAGGATAAAATGGAAACTGATGTGGAGGCTTTTTTGAGACGACGTTATAAAGGTCAAATTGCTGATATTGAGATTTTAGAGAAAGAAGACCTTGATCTTAAGAATCATCTATCGGGCTTGCGTAAGGCATATTTAAAGCTATCATTTGACACTGTTCAAGAATTGCTGAATGTAAAGAGTGAACTACTGCATGTTGTTGAAAGCAATTGGGAGAAGTCTGATGCTGCAGAAGCATATGATTCTATTTTATTTGGGAAAAGAGAACAGAAGCCTCAAGATTTTCTAGAATGTATTGTTGATCTTCGAGAGTACGATGTTCCTTACCACGTTCGCTTTGCTATTGATCATGATTTGCGCTGTGGACTGTGGTATGATGTCAGTGTTTCAAGCACTGGTATTACACTTGAGAAGAGAAAAGATCTTCTGCAACGTGCTGAAGTTCGGATATGTGCATTCGATATTGAGACCACAAAACTACCATTGAAATTTCCAGATGCTGAATATGACATGATAATGATGATTTCCTATATGGTTGATGGACAAGGGTACTTGATTATCAATAGAGAGTGTGTTGGAGAAGATATTGAGAATTTGGAATACACTCCAAAACCAGAATACGAAGGGTTCTTCAAAGTGACTAATGTGAAAAATGAGTTAGAGCTTCTCAAACTGTGGTTTGCCCATATGCGAGAGGTGAAACCTGGTATCTACGTCACCTACAATGGCGACTATTTTGACTGGCCATTCCTTGAAAGCAGAGCAGCATATCATGGATTTAAAATGAGTGATGAAGTAGGATTTCAATGCGACAAGAATCAGGGGGAGTGTCGTTCAAAATTTGCTTGTCATCTGGATTGTTTTGCCTGGGTAAAGCGTGATAGTTATCTTCCTCAGGGTAGCCATGGTTTGAAGGCTGTCACAAAAGCAAAATTAGGTTATGATCCTCTTGAAGTGAATCCAGAAGATATGGTGCGATATGCAAAGGAAAAGCCTCAGATGATGGCTTCCTATTCCGTTTCAGATGCTGTTGCTACATACTACTTGTACATGACATATGTTCATCCTTTCATTTTTTCTCTAACAACTATCATTCCAATGTCACCGGATGAGGTGTTGCACAAGGGAAGTGGGACACTTTGTGAAATGCTTTTAATGGTTCAGGCTTATGAGGCTAATGTCGTGTGTCCTAACAAACATCAATCAGATCCAGAGAAGTTCTATAACAATCGGCTTCTTGAAAGTGAGACATACATAGGTGGTCATGTAGAATGTCTAGAGAGTGGTGTATTTAGATCTGACCTTCCTACCAGTTTTAGGCTTGATTCATCTGCTTATGATCATTTGATAAACAATCTAGATCGCGATTTGCAGTATGCCATTCAAGTAGAAGGAAAGATGGAATTGGAACTGGTGTCAAACTATAGTGATGTGAAGAATGATATTATGGGAAAGCTTATTAGATTGCGGGATGAGCCTGTCCGTGAAGAGTGCCCTCTGATCTATCACCTTGATGTAGCTGCAATGTATCCTAACATTATTTTAACAAATAGGCTTCAGCCGTCATCAATAGTTACAGATGAGGTTTGTACTGCTTGTGATTTCAACCGTCCTGGAAAAACTTGTCTAAGGAGACTTGAATGGGTTTGGCGTGGAGAGGTATTCATGGCTAAAAAAAGCGACTATTATCATCTGAAGAGGCAAATTGAGTCTGAGTTTGTCGACGGTGGTGACGTTCAGTTGTCAAAACCATTTCTTGAACTTCCGAAGTTGGAGCAACAAGCAAAACTCAAAGAGCGTTTAAAGAAATACTGTCAGAAGGCTTACAAACGGGTACTTGATAAGCCAGTCACTGAAGTTCGAGAAGCAGGGATCTGTATGAGAGAAAACTCCTTCTATATAGACACTGTTCGTAGTTTTCGGGACAGAAGGTATGAATACAAAGGGCTCAATAAAGTATGGAAGGGAAAACTATCAGAAGCTAAAGCGAATGGAAACTCAATCAAGATCCAGGAAGCCCAAGACATGGTAGTTCTCTATGATTCATTGCAACTTGCTCATAAATGTATCCTCAATTCTTTTTATGGTTATGTGATGCGAAAGGGTGCTCGTTGGTATTCAATGGAAATGGCTGGGGTTGTTACATATACTGGAGCAAAAATCATTCAGAATGCTCGTCTGCTGATTGAGAAAATTGGAAAACCACTAGAGTTAGACACTGATGGTATTTGGTGTGCACTGCCTGGATCATTCCCAGAGAACTTTACCTTTAAAACAAAAGATTCAAAGAAGTTGACAATTTCATATCCATGTGTTATGCTTAATGTTGATGTGGCAAGGAACAATACAAATGACCAATACCAGACACTTGTAGATCCTGTGAGGAAAATATATGAAACGCGTAGTGAATGCTCAATTGAATTCGAAGTGGATGGACCATACAAGGCAATGATCCTTCCTGCCTCCAAGGAAGAAGGCATTTTGATCAAGAAGAGATATGCTGTCTTCAATCATGATGGAACCCTTGCAGAGCTTAAAGGCTTTGAGATCAAGCGTAGGGGGGAGTTGAAGCTCATCAAAGTTTTCCAGGCTGAACTTTTTGACAAGTTTCTTCATGGTTCCACCTTAGAGGAATGCTATTCAGTTGTTGCATCTGTTGCAAATCACTGGCTCGATCTTCTAGATAGTCAAGGAAAAGATATTGCAGATAGTGAGTTACTTGATTATATATCTGAATCCAGTACCATGAGCAAGTCTTTGGCAGACTATGGCGAGCAAAAATCTTGTGCTGTTACCACTGCGAGACGTCTTGCTGATTTTCTTGGTGATACAATGGTCAGGGATAAAGGCCTACGTTGTCAATATATAGTTGCATGTGAACCCAAGGGAACACCCGTAAGTGAGCGAGCTGTTCCTGTTGCTATATTCGAGACTGATCTAGAGATAATGAGATTTTATGTACGCAAATGGTGCAAAATTTCATCAGAAGTCGGTATTCGATCCATCATTGACTGGTCCTACTACAAACAACGCCTAAGCTCAGCCATTCAAAAAATTATAACAATTCCAGCTGCCATGCAAAAGGTTTCAAATCCTGTCCCTAGGGTGGTCCATCCTGATTGGTTACATAAGAAAGTTCGTGAGAAGGATGATAAATTTCGCCAGCAGAAAATAGTTGATATGTTTGCCTCCTCAAGCAGAGGTAAATATTCAGAAAACAATGGTGGTGCTAGCAGCAGCAGCAAACTTGTGATGAACGGCGAAAATTCTGAGGATTTAGAAGACTTTCAAAAGAAAACGAGTTCTACAAATGGCCCCAGACCAGTTGCTCGACGTTACAACATTAGAGCCATGAAACATTCAATCACAAGAGATAGCCAAGTCGATTCTGTGATGCAGGAAAATTTTAATGGTGGAGGATGTGAGCCTTCTTCACCATTGCATTTTGAAGACATTGACAGGAATGTGGATTACCAAGGATGGCTTGAAATGAAGAAACGAAAGTGGAAGGATACTTTGGACAAGAGGAAGAAACAAAGATTGATAGATTTAAGGACTCCACTTCCTGTTAATGGTGTTTCACGGGATTTAAATTGTGGTATGAATGATAAAGAGGCTGCTGGAATAACAGGTGTTGGTTCATATTTCAAGAGGCATGACAATTCTATAACACGCTGCCATTGGCAGATTTTACAGCTTGTTCATAGTTCACAGAGTGACCAATATTTTGCTTGGGCTGTTGTTGAAGGAGTTATGCTGAAGATTCCTATTACTGTTCCTAGAGTATTTTACCTTAATTCTAAAGTACCCATTACAGAAGAATTTGTGGGTAGGCGTGTTAACAAAACCCTTCCCCATGGAAGGCACACCTATAACCTGTACGAGGTTGTGACTGATGAAAGTCAGTTTAGGACACAGAGTAATAAACTTGCTGCTCTCCTTGCAGATCCAGAAGTTGAGGGAATCTATGAAAGTAAGGTACCATTGGACTTCAAGTCCATCCTCCAGATTGGTTGTGTCTGTAAAGTTGACAAAAATGCCAAAAAACGAAACATTCAAGATGGGTGGAGTCTGGATGAACTGCAAATGAAGACTACAACAGAATGTAGCTATCTGGAAAAGCCAATCCCTTTCTTCTATGTGTACAATAGCATTTCTAAAGGAGGAGCTATCTACATTACTTATTTTCCTGCCACAAAATCCATACTTGTGGTGGTGGTTAGTTCTTACCGAAACAAAGACTTGTCATCAAATTTTCTTGAAAGGAAATTTTGTGAAGCTTGTGGTCAGTCACAACCTTCTAAAAGTGGTATAACTTACAAGGAACTTTTGGGAAATTATGAGGGTCTTTTACCGAGCATAAAACGTGGACCTATTGTAGCTATAATTCAGTCCCCAAATGTGCAGCTGCTGAAGTCAGCTGTGAAAGCATTAGATGATTTTCCGTGCGCGAACATACCTTATAATGCTCGTGATAGCCAATCTGAGTTTCTTGGTTGGCAACAAAAAGCTGCTCAGATTGGAATGGAACGGTGTGCCGCATCATCCCAATGGTTGAATGATAGGATCTCTCTTGCAAGATATGCCCATGTACCGTTAGGAAATTTTGGACTTGATTGGACAATTTTTACTGCAGATATTTTCTTTTCAAGGGCATTACATGATCAACAACAGGTCCTTTGGATATCAGATGACGGTGTTCCAGATATAGGAGGCAATAACATTGAAGACGTTTGTTTTGTCGATGAGGTCCAACAACCTTTTCTGAATTGCTGTGGAGCATACAGAAAAATTTCTGTGGAGCTGAAGATCCATCATTTGGTTGTCAATGCTTTGCTGAAGAGCAACCAATTGAATGAAATGGAAGGAGGTGGCATTGACGAGGCTGCATCAAATGCCCCAGCATTTCTTGTCTTGAAACAATTGATTCAAAGGTGTCTTGTAGATGCACTTACATCTGGAAATGAATATGCCGATGAAATTTTGCAACATCTGTACCGTTGGATTTGCAGCCCTCGATCAAGGCTTCACGACCCAGCTCTTCATTGCTTGCTTCACAAGGCAATGCAAAAGGTGTTTGCTCTTTTGTTGGCTGCACTACGCAAATTAGGTGCCACCATTATTTTTGCAAACTTCTCAAAAGTCATCATAGACACGGGAAGGTTTGATGTTTCTGCTGCTAAAGCATACTGTGACAGCTTGCTGAAAACACTGCAAACAAGGGACCTGTTTGAGTGGATTGAGCTGAAACCGGTACAGTTCTGGCACTCGCTGTTATTTATGGATCAGTACAACTATGGTGGAATTCCAGTAAAAGATGGTGACTCTCAAGTTGAAATATTGCGCAACTGGAACATTGCGGAATATCTACCTAAGGAGATTCAGGATTCTTTTATTAGGATCGTTTGTCAATATTTATACATTCCATGGAAATATGCAACCAAGCTAGCTGGAGCAAAAGCATCGTTGCAGCGGGACGACGACACGTGTAACCCTTCCATTGAATCGTTAGAATCACACATGACAGAACATCTCAAAGAACAGTTGAGTTCATACTTCAGCAACAAACTATTTGAAATTGTTCGTGATATTTTACTAAAACAACCTCGTGGTAGTGTCCATAAAGGAGATGCTGCATTGGAATTCATTAAGTACGTTTGTGCTGCATTGGATCTCGACCAAAATGTCCGAGATGATGTTCGGAAAATCAAGAAGAATTTACTGAAGTTTGTGCATGTAAGAGAGTTTGCACCAGAAGCTGAGTTTTCCAATCCTTGCACTCCCTTCATCTTACCCAATGTCTTTTGCAGCTCTTGTAATGACTGTCGAGATTTGGACTTGTGTCGAGATTTGGACTTGTCCAGTGACTCACCTTTAGAAGAACAAAAATGGTATTGTGCTGTGCCAGGATGTAAACAACCATACGACCAAGAAATGATAGAGCATGCTCTGATTCAAATTGTGATGCAGAGAGAGCGTGCATATCACGTGCAGGATTTGGTATGCGGTCGATGCAAGCAGGTTAAAGCTGCTCATTTGTGGGAACAATGTGCCTGTGCTGGCACATTCCACTGCAAAGAAGATGACAAGGAATTTTCCAGCAAGATGAGGATTCTCTTGGATGTTGCCATTCGTCAAAAGTTTGAACTACTCCAAGAGCTCATCTCATGGATCTTGGCAAATGGGTCGAAATCAAAATCTGTTATCATCTCAATATAG | 6510 | 40.4 | MTNQLSSGNRRRDFTNNHKWKKHRIIQSAEEEIESKFGFNLFSKGDKRLGWLLTFTPSSCKDEDTEKIYSCIDLYFVTQDGSSFKSKYKFRPYFYAATKDKMETDVEAFLRRRYKGQIADIEILEKEDLDLKNHLSGLRKAYLKLSFDTVQELLNVKSELLHVVESNWEKSDAAEAYDSILFGKREQKPQDFLECIVDLREYDVPYHVRFAIDHDLRCGLWYDVSVSSTGITLEKRKDLLQRAEVRICAFDIETTKLPLKFPDAEYDMIMMISYMVDGQGYLIINRECVGEDIENLEYTPKPEYEGFFKVTNVKNELELLKLWFAHMREVKPGIYVTYNGDYFDWPFLESRAAYHGFKMSDEVGFQCDKNQGECRSKFACHLDCFAWVKRDSYLPQGSHGLKAVTKAKLGYDPLEVNPEDMVRYAKEKPQMMASYSVSDAVATYYLYMTYVHPFIFSLTTIIPMSPDEVLHKGSGTLCEMLLMVQAYEANVVCPNKHQSDPEKFYNNRLLESETYIGGHVECLESGVFRSDLPTSFRLDSSAYDHLINNLDRDLQYAIQVEGKMELELVSNYSDVKNDIMGKLIRLRDEPVREECPLIYHLDVAAMYPNIILTNRLQPSSIVTDEVCTACDFNRPGKTCLRRLEWVWRGEVFMAKKSDYYHLKRQIESEFVDGGDVQLSKPFLELPKLEQQAKLKERLKKYCQKAYKRVLDKPVTEVREAGICMRENSFYIDTVRSFRDRRYEYKGLNKVWKGKLSEAKANGNSIKIQEAQDMVVLYDSLQLAHKCILNSFYGYVMRKGARWYSMEMAGVVTYTGAKIIQNARLLIEKIGKPLELDTDGIWCALPGSFPENFTFKTKDSKKLTISYPCVMLNVDVARNNTNDQYQTLVDPVRKIYETRSECSIEFEVDGPYKAMILPASKEEGILIKKRYAVFNHDGTLAELKGFEIKRRGELKLIKVFQAELFDKFLHGSTLEECYSVVASVANHWLDLLDSQGKDIADSELLDYISESSTMSKSLADYGEQKSCAVTTARRLADFLGDTMVRDKGLRCQYIVACEPKGTPVSERAVPVAIFETDLEIMRFYVRKWCKISSEVGIRSIIDWSYYKQRLSSAIQKIITIPAAMQKVSNPVPRVVHPDWLHKKVREKDDKFRQQKIVDMFASSSRGKYSENNGGASSSSKLVMNGENSEDLEDFQKKTSSTNGPRPVARRYNIRAMKHSITRDSQVDSVMQENFNGGGCEPSSPLHFEDIDRNVDYQGWLEMKKRKWKDTLDKRKKQRLIDLRTPLPVNGVSRDLNCGMNDKEAAGITGVGSYFKRHDNSITRCHWQILQLVHSSQSDQYFAWAVVEGVMLKIPITVPRVFYLNSKVPITEEFVGRRVNKTLPHGRHTYNLYEVVTDESQFRTQSNKLAALLADPEVEGIYESKVPLDFKSILQIGCVCKVDKNAKKRNIQDGWSLDELQMKTTTECSYLEKPIPFFYVYNSISKGGAIYITYFPATKSILVVVVSSYRNKDLSSNFLERKFCEACGQSQPSKSGITYKELLGNYEGLLPSIKRGPIVAIIQSPNVQLLKSAVKALDDFPCANIPYNARDSQSEFLGWQQKAAQIGMERCAASSQWLNDRISLARYAHVPLGNFGLDWTIFTADIFFSRALHDQQQVLWISDDGVPDIGGNNIEDVCFVDEVQQPFLNCCGAYRKISVELKIHHLVVNALLKSNQLNEMEGGGIDEAASNAPAFLVLKQLIQRCLVDALTSGNEYADEILQHLYRWICSPRSRLHDPALHCLLHKAMQKVFALLLAALRKLGATIIFANFSKVIIDTGRFDVSAAKAYCDSLLKTLQTRDLFEWIELKPVQFWHSLLFMDQYNYGGIPVKDGDSQVEILRNWNIAEYLPKEIQDSFIRIVCQYLYIPWKYATKLAGAKASLQRDDDTCNPSIESLESHMTEHLKEQLSSYFSNKLFEIVRDILLKQPRGSVHKGDAALEFIKYVCAALDLDQNVRDDVRKIKKNLLKFVHVREFAPEAEFSNPCTPFILPNVFCSSCNDCRDLDLCRDLDLSSDSPLEEQKWYCAVPGCKQPYDQEMIEHALIQIVMQRERAYHVQDLVCGRCKQVKAAHLWEQCACAGTFHCKEDDKEFSSKMRILLDVAIRQKFELLQELISWILANGSKSKSVIISI | 2169 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 2558628 | 2581570 | + | Lag0024374.1 | Lac10g0329 | 582860 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac10g0329 | 2169 | Gene3D | - | 242 | 471 | IPR036397 | GO:0003676(InterPro) | |
Lac10g0329 | 2169 | Gene3D | Palm domain of DNA polymerase | 755 | 940 | IPR023211 | - | |
Lac10g0329 | 2169 | Pfam | Domain of unknown function (DUF1744) | 1552 | 1866 | IPR013697 | GO:0003887(InterPro)|GO:0005634(InterPro)|GO:0006260(InterPro)|GO:0008270(InterPro) | |
Lac10g0329 | 2169 | CDD | POLBc_epsilon | 507 | 1125 | - | - | |
Lac10g0329 | 2169 | PANTHER | DNA POLYMERASE EPSILON CATALYTIC SUBUNIT A | 9 | 2129 | IPR029703 | GO:0000278(PANTHER)|GO:0003677(InterPro)|GO:0003677(PANTHER)|GO:0003887(PANTHER)|GO:0003887(InterPro)|GO:0006260(InterPro)|GO:0006272(PANTHER)|GO:0006281(InterPro)|GO:0006287(PANTHER)|GO:0006297(PANTHER)|GO:0008310(PANTHER)|GO:0008622(PANTHER)|GO:0008622(InterPro)|GO:0045004(PANTHER) | |
Lac10g0329 | 2169 | MobiDBLite | consensus disorder prediction | 1162 | 1184 | - | - | |
Lac10g0329 | 2169 | CDD | DNA_polB_epsilon_exo | 244 | 448 | - | - | |
Lac10g0329 | 2169 | SMART | DUF1744_2 | 1511 | 1866 | IPR013697 | GO:0003887(InterPro)|GO:0005634(InterPro)|GO:0006260(InterPro)|GO:0008270(InterPro) | |
Lac10g0329 | 2169 | Gene3D | DNA Polymerase, chain B, domain 1 | 60 | 236 | - | - | |
Lac10g0329 | 2169 | Gene3D | - | 944 | 1128 | IPR042087 | - | |
Lac10g0329 | 2169 | FunFam | DNA polymerase epsilon catalytic subunit | 60 | 231 | - | - | |
Lac10g0329 | 2169 | Pfam | Zinc finger domain of DNA polymerase-epsilon | 2094 | 2156 | IPR054475 | - | |
Lac10g0329 | 2169 | SUPERFAMILY | Ribonuclease H-like | 70 | 494 | IPR012337 | - | |
Lac10g0329 | 2169 | FunFam | DNA polymerase epsilon catalytic subunit | 944 | 1128 | - | - | |
Lac10g0329 | 2169 | Pfam | DNA polymerase epsilon catalytic subunit A, thumb domain | 949 | 1124 | - | - | |
Lac10g0329 | 2169 | FunFam | DNA polymerase epsilon catalytic subunit | 758 | 940 | - | - | |
Lac10g0329 | 2169 | MobiDBLite | consensus disorder prediction | 1162 | 1205 | - | - | |
Lac10g0329 | 2169 | Pfam | DNA polymerase family B, exonuclease domain | 198 | 404 | IPR006133 | - | |
Lac10g0329 | 2169 | FunFam | DNA polymerase epsilon catalytic subunit | 244 | 472 | - | - | |
Lac10g0329 | 2169 | SMART | polmehr3 | 243 | 846 | IPR006172 | GO:0000166(InterPro)|GO:0003676(InterPro)|GO:0003887(InterPro) | |
Lac10g0329 | 2169 | FunFam | DNA polymerase epsilon catalytic subunit | 727 | 802 | - | - | |
Lac10g0329 | 2169 | SUPERFAMILY | DNA/RNA polymerases | 490 | 1118 | IPR043502 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac10g0329 | Lac-Chr10:2558628 | Lac9g2692 | Lac-Chr9:45189083 | 0.00E+00 | dispersed | |
Lac10g0329 | Lac-Chr10:2558628 | Lac7g1484 | Lac-Chr7:15705583 | 3.80E-20 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac10g0329 | K02324 | - | csv:101208568 | 3618.94 |