Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g0329 ATGACGAATCAGCTGAGTAGTGGAAACCGAAGGCGGGACTTCACAAACAACCATAAGTGGAAGAAGCATAGGATAATCCAATCAGCTGAGGAAGAGATTGAATCAAAGTTTGGATTCAATCTCTTCTCTAAAGGCGACAAGAGGCTTGGATGGTTGCTCACTTTCACTCCTTCATCTTGTAAGGATGAGGATACTGAAAAAATCTACAGCTGTATCGATCTTTATTTTGTCACACAGGATGGCAGCAGTTTCAAATCAAAATATAAGTTTCGTCCTTACTTTTATGCAGCCACAAAGGATAAAATGGAAACTGATGTGGAGGCTTTTTTGAGACGACGTTATAAAGGTCAAATTGCTGATATTGAGATTTTAGAGAAAGAAGACCTTGATCTTAAGAATCATCTATCGGGCTTGCGTAAGGCATATTTAAAGCTATCATTTGACACTGTTCAAGAATTGCTGAATGTAAAGAGTGAACTACTGCATGTTGTTGAAAGCAATTGGGAGAAGTCTGATGCTGCAGAAGCATATGATTCTATTTTATTTGGGAAAAGAGAACAGAAGCCTCAAGATTTTCTAGAATGTATTGTTGATCTTCGAGAGTACGATGTTCCTTACCACGTTCGCTTTGCTATTGATCATGATTTGCGCTGTGGACTGTGGTATGATGTCAGTGTTTCAAGCACTGGTATTACACTTGAGAAGAGAAAAGATCTTCTGCAACGTGCTGAAGTTCGGATATGTGCATTCGATATTGAGACCACAAAACTACCATTGAAATTTCCAGATGCTGAATATGACATGATAATGATGATTTCCTATATGGTTGATGGACAAGGGTACTTGATTATCAATAGAGAGTGTGTTGGAGAAGATATTGAGAATTTGGAATACACTCCAAAACCAGAATACGAAGGGTTCTTCAAAGTGACTAATGTGAAAAATGAGTTAGAGCTTCTCAAACTGTGGTTTGCCCATATGCGAGAGGTGAAACCTGGTATCTACGTCACCTACAATGGCGACTATTTTGACTGGCCATTCCTTGAAAGCAGAGCAGCATATCATGGATTTAAAATGAGTGATGAAGTAGGATTTCAATGCGACAAGAATCAGGGGGAGTGTCGTTCAAAATTTGCTTGTCATCTGGATTGTTTTGCCTGGGTAAAGCGTGATAGTTATCTTCCTCAGGGTAGCCATGGTTTGAAGGCTGTCACAAAAGCAAAATTAGGTTATGATCCTCTTGAAGTGAATCCAGAAGATATGGTGCGATATGCAAAGGAAAAGCCTCAGATGATGGCTTCCTATTCCGTTTCAGATGCTGTTGCTACATACTACTTGTACATGACATATGTTCATCCTTTCATTTTTTCTCTAACAACTATCATTCCAATGTCACCGGATGAGGTGTTGCACAAGGGAAGTGGGACACTTTGTGAAATGCTTTTAATGGTTCAGGCTTATGAGGCTAATGTCGTGTGTCCTAACAAACATCAATCAGATCCAGAGAAGTTCTATAACAATCGGCTTCTTGAAAGTGAGACATACATAGGTGGTCATGTAGAATGTCTAGAGAGTGGTGTATTTAGATCTGACCTTCCTACCAGTTTTAGGCTTGATTCATCTGCTTATGATCATTTGATAAACAATCTAGATCGCGATTTGCAGTATGCCATTCAAGTAGAAGGAAAGATGGAATTGGAACTGGTGTCAAACTATAGTGATGTGAAGAATGATATTATGGGAAAGCTTATTAGATTGCGGGATGAGCCTGTCCGTGAAGAGTGCCCTCTGATCTATCACCTTGATGTAGCTGCAATGTATCCTAACATTATTTTAACAAATAGGCTTCAGCCGTCATCAATAGTTACAGATGAGGTTTGTACTGCTTGTGATTTCAACCGTCCTGGAAAAACTTGTCTAAGGAGACTTGAATGGGTTTGGCGTGGAGAGGTATTCATGGCTAAAAAAAGCGACTATTATCATCTGAAGAGGCAAATTGAGTCTGAGTTTGTCGACGGTGGTGACGTTCAGTTGTCAAAACCATTTCTTGAACTTCCGAAGTTGGAGCAACAAGCAAAACTCAAAGAGCGTTTAAAGAAATACTGTCAGAAGGCTTACAAACGGGTACTTGATAAGCCAGTCACTGAAGTTCGAGAAGCAGGGATCTGTATGAGAGAAAACTCCTTCTATATAGACACTGTTCGTAGTTTTCGGGACAGAAGGTATGAATACAAAGGGCTCAATAAAGTATGGAAGGGAAAACTATCAGAAGCTAAAGCGAATGGAAACTCAATCAAGATCCAGGAAGCCCAAGACATGGTAGTTCTCTATGATTCATTGCAACTTGCTCATAAATGTATCCTCAATTCTTTTTATGGTTATGTGATGCGAAAGGGTGCTCGTTGGTATTCAATGGAAATGGCTGGGGTTGTTACATATACTGGAGCAAAAATCATTCAGAATGCTCGTCTGCTGATTGAGAAAATTGGAAAACCACTAGAGTTAGACACTGATGGTATTTGGTGTGCACTGCCTGGATCATTCCCAGAGAACTTTACCTTTAAAACAAAAGATTCAAAGAAGTTGACAATTTCATATCCATGTGTTATGCTTAATGTTGATGTGGCAAGGAACAATACAAATGACCAATACCAGACACTTGTAGATCCTGTGAGGAAAATATATGAAACGCGTAGTGAATGCTCAATTGAATTCGAAGTGGATGGACCATACAAGGCAATGATCCTTCCTGCCTCCAAGGAAGAAGGCATTTTGATCAAGAAGAGATATGCTGTCTTCAATCATGATGGAACCCTTGCAGAGCTTAAAGGCTTTGAGATCAAGCGTAGGGGGGAGTTGAAGCTCATCAAAGTTTTCCAGGCTGAACTTTTTGACAAGTTTCTTCATGGTTCCACCTTAGAGGAATGCTATTCAGTTGTTGCATCTGTTGCAAATCACTGGCTCGATCTTCTAGATAGTCAAGGAAAAGATATTGCAGATAGTGAGTTACTTGATTATATATCTGAATCCAGTACCATGAGCAAGTCTTTGGCAGACTATGGCGAGCAAAAATCTTGTGCTGTTACCACTGCGAGACGTCTTGCTGATTTTCTTGGTGATACAATGGTCAGGGATAAAGGCCTACGTTGTCAATATATAGTTGCATGTGAACCCAAGGGAACACCCGTAAGTGAGCGAGCTGTTCCTGTTGCTATATTCGAGACTGATCTAGAGATAATGAGATTTTATGTACGCAAATGGTGCAAAATTTCATCAGAAGTCGGTATTCGATCCATCATTGACTGGTCCTACTACAAACAACGCCTAAGCTCAGCCATTCAAAAAATTATAACAATTCCAGCTGCCATGCAAAAGGTTTCAAATCCTGTCCCTAGGGTGGTCCATCCTGATTGGTTACATAAGAAAGTTCGTGAGAAGGATGATAAATTTCGCCAGCAGAAAATAGTTGATATGTTTGCCTCCTCAAGCAGAGGTAAATATTCAGAAAACAATGGTGGTGCTAGCAGCAGCAGCAAACTTGTGATGAACGGCGAAAATTCTGAGGATTTAGAAGACTTTCAAAAGAAAACGAGTTCTACAAATGGCCCCAGACCAGTTGCTCGACGTTACAACATTAGAGCCATGAAACATTCAATCACAAGAGATAGCCAAGTCGATTCTGTGATGCAGGAAAATTTTAATGGTGGAGGATGTGAGCCTTCTTCACCATTGCATTTTGAAGACATTGACAGGAATGTGGATTACCAAGGATGGCTTGAAATGAAGAAACGAAAGTGGAAGGATACTTTGGACAAGAGGAAGAAACAAAGATTGATAGATTTAAGGACTCCACTTCCTGTTAATGGTGTTTCACGGGATTTAAATTGTGGTATGAATGATAAAGAGGCTGCTGGAATAACAGGTGTTGGTTCATATTTCAAGAGGCATGACAATTCTATAACACGCTGCCATTGGCAGATTTTACAGCTTGTTCATAGTTCACAGAGTGACCAATATTTTGCTTGGGCTGTTGTTGAAGGAGTTATGCTGAAGATTCCTATTACTGTTCCTAGAGTATTTTACCTTAATTCTAAAGTACCCATTACAGAAGAATTTGTGGGTAGGCGTGTTAACAAAACCCTTCCCCATGGAAGGCACACCTATAACCTGTACGAGGTTGTGACTGATGAAAGTCAGTTTAGGACACAGAGTAATAAACTTGCTGCTCTCCTTGCAGATCCAGAAGTTGAGGGAATCTATGAAAGTAAGGTACCATTGGACTTCAAGTCCATCCTCCAGATTGGTTGTGTCTGTAAAGTTGACAAAAATGCCAAAAAACGAAACATTCAAGATGGGTGGAGTCTGGATGAACTGCAAATGAAGACTACAACAGAATGTAGCTATCTGGAAAAGCCAATCCCTTTCTTCTATGTGTACAATAGCATTTCTAAAGGAGGAGCTATCTACATTACTTATTTTCCTGCCACAAAATCCATACTTGTGGTGGTGGTTAGTTCTTACCGAAACAAAGACTTGTCATCAAATTTTCTTGAAAGGAAATTTTGTGAAGCTTGTGGTCAGTCACAACCTTCTAAAAGTGGTATAACTTACAAGGAACTTTTGGGAAATTATGAGGGTCTTTTACCGAGCATAAAACGTGGACCTATTGTAGCTATAATTCAGTCCCCAAATGTGCAGCTGCTGAAGTCAGCTGTGAAAGCATTAGATGATTTTCCGTGCGCGAACATACCTTATAATGCTCGTGATAGCCAATCTGAGTTTCTTGGTTGGCAACAAAAAGCTGCTCAGATTGGAATGGAACGGTGTGCCGCATCATCCCAATGGTTGAATGATAGGATCTCTCTTGCAAGATATGCCCATGTACCGTTAGGAAATTTTGGACTTGATTGGACAATTTTTACTGCAGATATTTTCTTTTCAAGGGCATTACATGATCAACAACAGGTCCTTTGGATATCAGATGACGGTGTTCCAGATATAGGAGGCAATAACATTGAAGACGTTTGTTTTGTCGATGAGGTCCAACAACCTTTTCTGAATTGCTGTGGAGCATACAGAAAAATTTCTGTGGAGCTGAAGATCCATCATTTGGTTGTCAATGCTTTGCTGAAGAGCAACCAATTGAATGAAATGGAAGGAGGTGGCATTGACGAGGCTGCATCAAATGCCCCAGCATTTCTTGTCTTGAAACAATTGATTCAAAGGTGTCTTGTAGATGCACTTACATCTGGAAATGAATATGCCGATGAAATTTTGCAACATCTGTACCGTTGGATTTGCAGCCCTCGATCAAGGCTTCACGACCCAGCTCTTCATTGCTTGCTTCACAAGGCAATGCAAAAGGTGTTTGCTCTTTTGTTGGCTGCACTACGCAAATTAGGTGCCACCATTATTTTTGCAAACTTCTCAAAAGTCATCATAGACACGGGAAGGTTTGATGTTTCTGCTGCTAAAGCATACTGTGACAGCTTGCTGAAAACACTGCAAACAAGGGACCTGTTTGAGTGGATTGAGCTGAAACCGGTACAGTTCTGGCACTCGCTGTTATTTATGGATCAGTACAACTATGGTGGAATTCCAGTAAAAGATGGTGACTCTCAAGTTGAAATATTGCGCAACTGGAACATTGCGGAATATCTACCTAAGGAGATTCAGGATTCTTTTATTAGGATCGTTTGTCAATATTTATACATTCCATGGAAATATGCAACCAAGCTAGCTGGAGCAAAAGCATCGTTGCAGCGGGACGACGACACGTGTAACCCTTCCATTGAATCGTTAGAATCACACATGACAGAACATCTCAAAGAACAGTTGAGTTCATACTTCAGCAACAAACTATTTGAAATTGTTCGTGATATTTTACTAAAACAACCTCGTGGTAGTGTCCATAAAGGAGATGCTGCATTGGAATTCATTAAGTACGTTTGTGCTGCATTGGATCTCGACCAAAATGTCCGAGATGATGTTCGGAAAATCAAGAAGAATTTACTGAAGTTTGTGCATGTAAGAGAGTTTGCACCAGAAGCTGAGTTTTCCAATCCTTGCACTCCCTTCATCTTACCCAATGTCTTTTGCAGCTCTTGTAATGACTGTCGAGATTTGGACTTGTGTCGAGATTTGGACTTGTCCAGTGACTCACCTTTAGAAGAACAAAAATGGTATTGTGCTGTGCCAGGATGTAAACAACCATACGACCAAGAAATGATAGAGCATGCTCTGATTCAAATTGTGATGCAGAGAGAGCGTGCATATCACGTGCAGGATTTGGTATGCGGTCGATGCAAGCAGGTTAAAGCTGCTCATTTGTGGGAACAATGTGCCTGTGCTGGCACATTCCACTGCAAAGAAGATGACAAGGAATTTTCCAGCAAGATGAGGATTCTCTTGGATGTTGCCATTCGTCAAAAGTTTGAACTACTCCAAGAGCTCATCTCATGGATCTTGGCAAATGGGTCGAAATCAAAATCTGTTATCATCTCAATATAG 6510 40.4 MTNQLSSGNRRRDFTNNHKWKKHRIIQSAEEEIESKFGFNLFSKGDKRLGWLLTFTPSSCKDEDTEKIYSCIDLYFVTQDGSSFKSKYKFRPYFYAATKDKMETDVEAFLRRRYKGQIADIEILEKEDLDLKNHLSGLRKAYLKLSFDTVQELLNVKSELLHVVESNWEKSDAAEAYDSILFGKREQKPQDFLECIVDLREYDVPYHVRFAIDHDLRCGLWYDVSVSSTGITLEKRKDLLQRAEVRICAFDIETTKLPLKFPDAEYDMIMMISYMVDGQGYLIINRECVGEDIENLEYTPKPEYEGFFKVTNVKNELELLKLWFAHMREVKPGIYVTYNGDYFDWPFLESRAAYHGFKMSDEVGFQCDKNQGECRSKFACHLDCFAWVKRDSYLPQGSHGLKAVTKAKLGYDPLEVNPEDMVRYAKEKPQMMASYSVSDAVATYYLYMTYVHPFIFSLTTIIPMSPDEVLHKGSGTLCEMLLMVQAYEANVVCPNKHQSDPEKFYNNRLLESETYIGGHVECLESGVFRSDLPTSFRLDSSAYDHLINNLDRDLQYAIQVEGKMELELVSNYSDVKNDIMGKLIRLRDEPVREECPLIYHLDVAAMYPNIILTNRLQPSSIVTDEVCTACDFNRPGKTCLRRLEWVWRGEVFMAKKSDYYHLKRQIESEFVDGGDVQLSKPFLELPKLEQQAKLKERLKKYCQKAYKRVLDKPVTEVREAGICMRENSFYIDTVRSFRDRRYEYKGLNKVWKGKLSEAKANGNSIKIQEAQDMVVLYDSLQLAHKCILNSFYGYVMRKGARWYSMEMAGVVTYTGAKIIQNARLLIEKIGKPLELDTDGIWCALPGSFPENFTFKTKDSKKLTISYPCVMLNVDVARNNTNDQYQTLVDPVRKIYETRSECSIEFEVDGPYKAMILPASKEEGILIKKRYAVFNHDGTLAELKGFEIKRRGELKLIKVFQAELFDKFLHGSTLEECYSVVASVANHWLDLLDSQGKDIADSELLDYISESSTMSKSLADYGEQKSCAVTTARRLADFLGDTMVRDKGLRCQYIVACEPKGTPVSERAVPVAIFETDLEIMRFYVRKWCKISSEVGIRSIIDWSYYKQRLSSAIQKIITIPAAMQKVSNPVPRVVHPDWLHKKVREKDDKFRQQKIVDMFASSSRGKYSENNGGASSSSKLVMNGENSEDLEDFQKKTSSTNGPRPVARRYNIRAMKHSITRDSQVDSVMQENFNGGGCEPSSPLHFEDIDRNVDYQGWLEMKKRKWKDTLDKRKKQRLIDLRTPLPVNGVSRDLNCGMNDKEAAGITGVGSYFKRHDNSITRCHWQILQLVHSSQSDQYFAWAVVEGVMLKIPITVPRVFYLNSKVPITEEFVGRRVNKTLPHGRHTYNLYEVVTDESQFRTQSNKLAALLADPEVEGIYESKVPLDFKSILQIGCVCKVDKNAKKRNIQDGWSLDELQMKTTTECSYLEKPIPFFYVYNSISKGGAIYITYFPATKSILVVVVSSYRNKDLSSNFLERKFCEACGQSQPSKSGITYKELLGNYEGLLPSIKRGPIVAIIQSPNVQLLKSAVKALDDFPCANIPYNARDSQSEFLGWQQKAAQIGMERCAASSQWLNDRISLARYAHVPLGNFGLDWTIFTADIFFSRALHDQQQVLWISDDGVPDIGGNNIEDVCFVDEVQQPFLNCCGAYRKISVELKIHHLVVNALLKSNQLNEMEGGGIDEAASNAPAFLVLKQLIQRCLVDALTSGNEYADEILQHLYRWICSPRSRLHDPALHCLLHKAMQKVFALLLAALRKLGATIIFANFSKVIIDTGRFDVSAAKAYCDSLLKTLQTRDLFEWIELKPVQFWHSLLFMDQYNYGGIPVKDGDSQVEILRNWNIAEYLPKEIQDSFIRIVCQYLYIPWKYATKLAGAKASLQRDDDTCNPSIESLESHMTEHLKEQLSSYFSNKLFEIVRDILLKQPRGSVHKGDAALEFIKYVCAALDLDQNVRDDVRKIKKNLLKFVHVREFAPEAEFSNPCTPFILPNVFCSSCNDCRDLDLCRDLDLSSDSPLEEQKWYCAVPGCKQPYDQEMIEHALIQIVMQRERAYHVQDLVCGRCKQVKAAHLWEQCACAGTFHCKEDDKEFSSKMRILLDVAIRQKFELLQELISWILANGSKSKSVIISI 2169
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2558628 2581570 + Lag0024374.1 Lac10g0329 582860
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g0329 2169 Gene3D - 242 471 IPR036397 GO:0003676(InterPro)
Lac10g0329 2169 Gene3D Palm domain of DNA polymerase 755 940 IPR023211 -
Lac10g0329 2169 Pfam Domain of unknown function (DUF1744) 1552 1866 IPR013697 GO:0003887(InterPro)|GO:0005634(InterPro)|GO:0006260(InterPro)|GO:0008270(InterPro)
Lac10g0329 2169 CDD POLBc_epsilon 507 1125 - -
Lac10g0329 2169 PANTHER DNA POLYMERASE EPSILON CATALYTIC SUBUNIT A 9 2129 IPR029703 GO:0000278(PANTHER)|GO:0003677(InterPro)|GO:0003677(PANTHER)|GO:0003887(PANTHER)|GO:0003887(InterPro)|GO:0006260(InterPro)|GO:0006272(PANTHER)|GO:0006281(InterPro)|GO:0006287(PANTHER)|GO:0006297(PANTHER)|GO:0008310(PANTHER)|GO:0008622(PANTHER)|GO:0008622(InterPro)|GO:0045004(PANTHER)
Lac10g0329 2169 MobiDBLite consensus disorder prediction 1162 1184 - -
Lac10g0329 2169 CDD DNA_polB_epsilon_exo 244 448 - -
Lac10g0329 2169 SMART DUF1744_2 1511 1866 IPR013697 GO:0003887(InterPro)|GO:0005634(InterPro)|GO:0006260(InterPro)|GO:0008270(InterPro)
Lac10g0329 2169 Gene3D DNA Polymerase, chain B, domain 1 60 236 - -
Lac10g0329 2169 Gene3D - 944 1128 IPR042087 -
Lac10g0329 2169 FunFam DNA polymerase epsilon catalytic subunit 60 231 - -
Lac10g0329 2169 Pfam Zinc finger domain of DNA polymerase-epsilon 2094 2156 IPR054475 -
Lac10g0329 2169 SUPERFAMILY Ribonuclease H-like 70 494 IPR012337 -
Lac10g0329 2169 FunFam DNA polymerase epsilon catalytic subunit 944 1128 - -
Lac10g0329 2169 Pfam DNA polymerase epsilon catalytic subunit A, thumb domain 949 1124 - -
Lac10g0329 2169 FunFam DNA polymerase epsilon catalytic subunit 758 940 - -
Lac10g0329 2169 MobiDBLite consensus disorder prediction 1162 1205 - -
Lac10g0329 2169 Pfam DNA polymerase family B, exonuclease domain 198 404 IPR006133 -
Lac10g0329 2169 FunFam DNA polymerase epsilon catalytic subunit 244 472 - -
Lac10g0329 2169 SMART polmehr3 243 846 IPR006172 GO:0000166(InterPro)|GO:0003676(InterPro)|GO:0003887(InterPro)
Lac10g0329 2169 FunFam DNA polymerase epsilon catalytic subunit 727 802 - -
Lac10g0329 2169 SUPERFAMILY DNA/RNA polymerases 490 1118 IPR043502 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0329 Lac-Chr10:2558628 Lac9g2692 Lac-Chr9:45189083 0.00E+00 dispersed
Lac10g0329 Lac-Chr10:2558628 Lac7g1484 Lac-Chr7:15705583 3.80E-20 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g0329 K02324 - csv:101208568 3618.94