Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g0332 ATGAAGAAGAAGTTTGTATTGCTCTCTTTTCTTTTCATCGCCATTGCCTCTTCTGAGGTACGCTTCTGCAGAGCCGACGCCTCGCCGGACACCGTCCTCGACACCGACGGTAAGAAGCTCCGGGCCGGCGACTACTACTACATTCTCCCGGCTTTCCACGGCAGCGGCGGCGGATTAACTATCAGCAGTATCCACGATCAATTAAGTAACGTCGTCGTCCAAGAACCTAATGAATTATCCGACGGTGTTCCGGCGACATTTGCGCCTATAAACCCTAAGAAAGGCGTCGTTCGAGTTTCGACCGATTTGAACATCCAATTCAAGCTGACATTGAAGTGCAGCGGATCGACGGTGTGGAAATTAGGCAAATTCGATCGGTATTTGAGGCAGTATTTCGTGACGATCGGTGGAACGAAAGGAAATCCAGGGCGCGAGACGCTCGACAGTTGGTTCAAAATTGAGAAGTACGGCAACGATTACAAGTTCGTGTACTGTCCAAGTGTGTGTAAGTACTGCAAGGTTATGTGCAAAGATATCGGCATTTTTAACTTCAATGGGAAGAGGGCTCTTGGTTTGAGTGATGCGCCATTCCCGGTTATGTTCAAGAAAGTTTGA 615 48.62 MKKKFVLLSFLFIAIASSEVRFCRADASPDTVLDTDGKKLRAGDYYYILPAFHGSGGGLTISSIHDQLSNVVVQEPNELSDGVPATFAPINPKKGVVRVSTDLNIQFKLTLKCSGSTVWKLGKFDRYLRQYFVTIGGTKGNPGRETLDSWFKIEKYGNDYKFVYCPSVCKYCKVMCKDIGIFNFNGKRALGLSDAPFPVMFKKV 204
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2607023 2607637 - Lag0024377.1 Lac10g0332 582863

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g0332 204 ProSitePatterns Soybean trypsin inhibitor (Kunitz) protease inhibitors family signature. 32 48 IPR002160 GO:0004866(InterPro)
Lac10g0332 204 CDD STI 32 203 IPR002160 GO:0004866(InterPro)
Lac10g0332 204 PANTHER KUNITZ TRYPSIN INHIBITOR 2 3 204 IPR002160 GO:0004866(InterPro)
Lac10g0332 204 SUPERFAMILY STI-like 28 204 IPR011065 -
Lac10g0332 204 Gene3D - 26 204 - -
Lac10g0332 204 SMART kul_2 31 204 IPR002160 GO:0004866(InterPro)
Lac10g0332 204 PRINTS Soybean trypsin inhibitor (Kunitz-type) signature 150 169 IPR002160 GO:0004866(InterPro)
Lac10g0332 204 PRINTS Soybean trypsin inhibitor (Kunitz-type) signature 68 88 IPR002160 GO:0004866(InterPro)
Lac10g0332 204 PRINTS Soybean trypsin inhibitor (Kunitz-type) signature 31 60 IPR002160 GO:0004866(InterPro)
Lac10g0332 204 Pfam Trypsin and protease inhibitor 32 203 IPR002160 GO:0004866(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g0332 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0332 Lac-Chr10:2607023 Lac10g0334 Lac-Chr10:2614280 2.70E-77 dispersed
Lac10g0332 Lac-Chr10:2607023 Lac10g0333 Lac-Chr10:2611553 7.00E-70 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g933 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi02g00279 . . . . . . . . . . . . . . . . . . . . Bhi08g01359 . . Lac10g0332 . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002445 5 4 0 5 2 1 1 1 1 1 1 1 1 3 3 0 1 2 1 1 1 2 1 3 8 2 1 1 1 6 61