Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g0333 ATGAAGAAGTTTGCATTACTGTCGTTTCTTTTCATCGTCATTGCCTCCACCGAGGTACGCTTCTGCAAAGCCGACGCTTCGCCGGACGCCGTCCTCGACGTCGACGGAAAGAAGCTCCGAGCCGGCGAAAACTACTACATCGTCCCGAATTTCTACGGAAACGCCGGCGGACTATCCGTCGGCAGTATTCAAAAGAATCAATGCGAACTGAACATCGTCGTAGGACTTTACGACGGTCTTCCGGCGACATTTTCGCCCGTAAACCCTAAGAAAGGCGTGGTTCGAGTTTCGACCGATTTGAACATCCAGTTTCAGGCGGACACACACTGCGGCAAATCGACGGTGTGGAAAGCCGGTAAGGTTGATCAGTACATATCGGAATATACGGTGACGATGGGCGGAACGAAGGGCGGCGTAGACAGTTGGTTCAAAATCGAGAAGCTGGGCAGTAATTACAAGTTGGTGTACTGTCCGACCGTGTGTAAGAACTGCAGAGTTTTGTGCAAAGATGTCGGCATGTTTTATGTCAATGGAAGGACGATTCTTGTTTTGAACAACAAGCCATTGCCCGTTACGTTTAAGAAAGTTTATTAA 594 49.16 MKKFALLSFLFIVIASTEVRFCKADASPDAVLDVDGKKLRAGENYYIVPNFYGNAGGLSVGSIQKNQCELNIVVGLYDGLPATFSPVNPKKGVVRVSTDLNIQFQADTHCGKSTVWKAGKVDQYISEYTVTMGGTKGGVDSWFKIEKLGSNYKLVYCPTVCKNCRVLCKDVGMFYVNGRTILVLNNKPLPVTFKKVY 197
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2611553 2612146 - Lag0024378.1 Lac10g0333 582864

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g0333 197 ProSitePatterns Soybean trypsin inhibitor (Kunitz) protease inhibitors family signature. 31 47 IPR002160 GO:0004866(InterPro)
Lac10g0333 197 SUPERFAMILY STI-like 27 196 IPR011065 -
Lac10g0333 197 PANTHER KUNITZ TRYPSIN INHIBITOR 2 2 196 IPR002160 GO:0004866(InterPro)
Lac10g0333 197 CDD STI 30 195 IPR002160 GO:0004866(InterPro)
Lac10g0333 197 Pfam Trypsin and protease inhibitor 31 195 IPR002160 GO:0004866(InterPro)
Lac10g0333 197 SMART kul_2 30 197 IPR002160 GO:0004866(InterPro)
Lac10g0333 197 Gene3D - 25 196 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g0333 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0332 Lac-Chr10:2607023 Lac10g0333 Lac-Chr10:2611553 7.00E-70 tandem
Lac10g0333 Lac-Chr10:2611553 Lac10g0334 Lac-Chr10:2614280 3.40E-77 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g931 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi02g00280 . . . . . . . . . . . Sed08g2588 . . . . . . . . Bhi08g01360 Tan05g2129 Cmetu12g1923 Lac10g0333 . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002445 5 4 0 5 2 1 1 1 1 1 1 1 1 3 3 0 1 2 1 1 1 2 1 3 8 2 1 1 1 6 61