Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g0340 ATGCCGCCGAGACGATATGCTGTTGGACGGGCCGATGAGGCCACCCACCCTGACTCCATTAGAGCCACCTTGGCTGAGTTCGTTTCCACTTTCATCTTCGTCTTCGCTGGCGAAGGCTCCGTCCTCGCTCTTGATAAAATTTTCAGGCCAGCAGATTATGGAACTTATGGCCATGGAAGTTATGGTCGAGGTTATGATCATGGCCGAGGTTATGATCACGGTTACGGTTGGAGGACGGGCGACACGGGCAGAGGGGCGTCAGATTTAGTAGTAATAGCGATAGCGCATGCATTTGCGCTGTTCGCCGCGGTTGCAGCGAGTATCAATGTCTCGGGTGGGCATGTGAATCCTGCTGTAACTTTTGGAGCTCTTCTTGGAGGGAGAATATCGCTCATCCGTGCATTCTTCTATTGGGTTGCTCAGATCTTGGGCGCCATCGTCGCTTCCCTTCTCTTGAGACTTGCAACCGGTGGCATGAGGCCTATGGGATTCTTCGTCTCATCAGGGATATCAGAATTGCACGGCTTTCTACTAGAGATAGTGCTTACATTTGCTTTGGTGTACACAGTGTACGCAACAGCAATAGATCCAAAGAGGGGCAGTTTGGGAACAATAGCACCACTGGCAATCGGGTTGATAGTCGGGGCGAATATTCTGGTGGGTGGGGCCTTTGATGGGGCCTGCATGAACCCGGCCCGGGCATTTGGGCCGTCCTTGGTGGGCTGGAGATGGGACAATCATTGGATCTACTGGATCGGCCCATTACTGGGAGGTGGGCTGGCTGCGCTGGTGTATGAGTACCTGGTCATTCCAGTTGAACCTCCTCTGCATACCCACCAGCCTTTGGCTCCTGAAGATTACTAA 864 53.01 MPPRRYAVGRADEATHPDSIRATLAEFVSTFIFVFAGEGSVLALDKIFRPADYGTYGHGSYGRGYDHGRGYDHGYGWRTGDTGRGASDLVVIAIAHAFALFAAVAASINVSGGHVNPAVTFGALLGGRISLIRAFFYWVAQILGAIVASLLLRLATGGMRPMGFFVSSGISELHGFLLEIVLTFALVYTVYATAIDPKRGSLGTIAPLAIGLIVGANILVGGAFDGACMNPARAFGPSLVGWRWDNHWIYWIGPLLGGGLAALVYEYLVIPVEPPLHTHQPLAPEDY 287
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2670358 2671914 + Lag0024385.1 Lac10g0340 582871
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g0340 287 PANTHER AQUAPORIN-8 5 277 IPR034294 GO:0006833(PANTHER)|GO:0015250(PANTHER)|GO:0016020(PANTHER)
Lac10g0340 287 Pfam Major intrinsic protein 14 265 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac10g0340 287 PRINTS Major intrinsic protein family signature 178 196 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac10g0340 287 PRINTS Major intrinsic protein family signature 211 233 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac10g0340 287 PRINTS Major intrinsic protein family signature 21 40 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac10g0340 287 PRINTS Major intrinsic protein family signature 133 152 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac10g0340 287 PRINTS Major intrinsic protein family signature 248 268 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac10g0340 287 NCBIfam MIP family channel protein 25 265 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac10g0340 287 CDD MIP 21 268 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac10g0340 287 SUPERFAMILY Aquaporin-like 13 278 IPR023271 -
Lac10g0340 287 FunFam Probable aquaporin TIP1-1 68 283 - -
Lac10g0340 287 ProSitePatterns MIP family signature. 114 122 IPR022357 -
Lac10g0340 287 Gene3D Glycerol uptake facilitator protein. 5 273 IPR023271 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0340 Lac-Chr10:2670358 Lac1g2185 Lac-Chr1:43310071 2.80E-80 dispersed
Lac10g0340 Lac-Chr10:2670358 Lac4g2901 Lac-Chr4:47447596 1.30E-66 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g0340 K09873 - csv:101208863 492.271