Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g0367 ATGGAGGCTGCTGCTGCTTTTGGCCATCTAAGGCCTGTCGTCAAGACCGAGAAGCCTGCCGGAGATGGCGACGGGGACGGGGATTCTCCTTCGAAACAACGTCTCCTCGTTAAGATGGGGAAAAATTATGGAAAACAAGAGCATGAAACTGAAGATAAAACAACCAATTCATCTGATCAAAAGGATTTGAGCTGCACCAAACTTCAGGAAGATCAACTGGAATCCGCCCGAGCGGAAATGGGAGAAGTGAGAGAAGAAAACCAGAGACTAAAAATGAGTTTAAGCCAAATCATGAAGGATTACGAAGCCCTAAGAATGCAATTCCTTGGAATCGTCAGACGAGAAGGAAAGAAATTACCGGAAGACAATGACAAGTTGAACAATGAACAACGTCACAACGATGACGATCGAAACCAAACCGACGAAACAGAGCTCGTTTCACTGACTTTGGGGAGGTTTCCAATGGCGGAGAAGAATAAGAATAAGGTGGCGGACGAGAAAATAGATCAAAGCAATAAGAGTTCTCAAGGTCGAGAGATGATTGGTGAGGAACAGGGCGTTCAAGAGACTTTATCGCTCGGTTTGAACTGCAAATTCGAGCAGGAATCGACGACTGTTAAAGAAGTTGATTCTCCAAATCGGAGTCTGACAAATAGCTTCGATCATGAGGCGAAGGAGGAAGCTGGAGAGACGAGTTGGCCGCCAAGTAAAGGGGTGAAGACGATGAGAAGCGGCGATGATGATGTTGCACAGCAGAATCTGCCCAAGCGCGCTAGGGTTTGCGTTAGAGCGCGATGCGAAACAGCTACGATGAACGACGGATGCCAATGGAGAAAATACGGGCAAAAGATAGCGAAAGGAAACCCATGTCCACGAGCATACTATCGCTGCACAGGCTCACCGACCTGTCCCGTTCGCAAACAAGTCCAACGATGCGCCGACGACATGTCGATCTTAATCACCACCTACGAAGGCACCCACAACCACCAACTACCCGTCTCCGCCACCGCCATGGCCTCCACCACCTCCGCCGCTGCCTCCATGCTCCTCTCCGGCTCCTCCTCCTCCGCCACCGCAAATCTCCACGGCCTAAACTTCTACCTCAACAACCCAACAAATAACAACAACAATCCCAAACCCAATTTTTACTTACCCAACAACTCCTCCATCATCTCTTCAACTTCCCCAACTCATCCCACCATCACTTTAGACCTCACTTCAAATCCTTCCTCCTCTTCCACTTCCATCTCCGCCCATCTCGGAAAGTTCCCGACCGGGTTCTCCAATTCCCGGTACCCTTTCACGAGCCAGCTCGACTTCGGTTCTTCTAGAAACAATGTGCTGTCGTGGAATAACGGCCTTCTTAGTTACAACAGAAATAACAACCCCACTGCCACGTCGACCACCAATGCAATCTATCAAAACTACATCCAACAACAGCAGCAACGGAACAATAATCTTAATCATCACGGTGTCGTCGCTGCCGCTGCCACGTCACTGCCACATCAGCAGCAGCCTTTGCCCGACACCATCGCCGCCGCCACCAAGGCCATCACGGCCGACCCGAGCTTCCAGTCTGCTCTCGCTGCTGCTCTCACGTCGATCATTGGCACCGGCGCCGGCGCCGGTGCGATTAAGTCGTCGGCGAGAGGTGAACAGCCGTTGTTTCAGTTGACTTCCACGGCGGCGAGTAAAGGGAGTGGATGTGGGACGAGCTTTTTGGGTAATATTGCGGCGGCGACGGCGACGGCAACGGCGAGTAATTCGCCGCCGGCTGGGAATGTGGTGTTTGTGCCGGCGAGTTCGTTGCCGTTTTCGAATCCGAAGAGTGCGTCGGCGTCTCCGGGTGATCATATTGATCTTACCAATTGA 1872 51.5 MEAAAAFGHLRPVVKTEKPAGDGDGDGDSPSKQRLLVKMGKNYGKQEHETEDKTTNSSDQKDLSCTKLQEDQLESARAEMGEVREENQRLKMSLSQIMKDYEALRMQFLGIVRREGKKLPEDNDKLNNEQRHNDDDRNQTDETELVSLTLGRFPMAEKNKNKVADEKIDQSNKSSQGREMIGEEQGVQETLSLGLNCKFEQESTTVKEVDSPNRSLTNSFDHEAKEEAGETSWPPSKGVKTMRSGDDDVAQQNLPKRARVCVRARCETATMNDGCQWRKYGQKIAKGNPCPRAYYRCTGSPTCPVRKQVQRCADDMSILITTYEGTHNHQLPVSATAMASTTSAAASMLLSGSSSSATANLHGLNFYLNNPTNNNNNPKPNFYLPNNSSIISSTSPTHPTITLDLTSNPSSSSTSISAHLGKFPTGFSNSRYPFTSQLDFGSSRNNVLSWNNGLLSYNRNNNPTATSTTNAIYQNYIQQQQQRNNNLNHHGVVAAAATSLPHQQQPLPDTIAAATKAITADPSFQSALAAALTSIIGTGAGAGAIKSSARGEQPLFQLTSTAASKGSGCGTSFLGNIAAATATATASNSPPAGNVVFVPASSLPFSNPKSASASPGDHIDLTN 623
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2868922 2872387 - Lag0024412.1 Lac10g0367 582898
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g0367 623 MobiDBLite consensus disorder prediction 117 144 - -
Lac10g0367 623 MobiDBLite consensus disorder prediction 15 31 - -
Lac10g0367 623 MobiDBLite consensus disorder prediction 1 70 - -
Lac10g0367 623 MobiDBLite consensus disorder prediction 204 218 - -
Lac10g0367 623 MobiDBLite consensus disorder prediction 158 173 - -
Lac10g0367 623 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 48 538 IPR044810 GO:0003700(InterPro)
Lac10g0367 623 Coils Coil 66 93 - -
Lac10g0367 623 ProSiteProfiles WRKY domain profile. 266 332 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lac10g0367 623 Pfam WRKY DNA -binding domain 272 330 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lac10g0367 623 FunFam probable WRKY transcription factor 31 256 333 - -
Lac10g0367 623 SUPERFAMILY WRKY DNA-binding domain 264 332 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lac10g0367 623 SMART WRKY_cls 271 331 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lac10g0367 623 Gene3D WRKY domain 256 333 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lac10g0367 623 MobiDBLite consensus disorder prediction 117 142 - -
Lac10g0367 623 MobiDBLite consensus disorder prediction 156 183 - -
Lac10g0367 623 MobiDBLite consensus disorder prediction 41 70 - -
Lac10g0367 623 MobiDBLite consensus disorder prediction 204 248 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0367 Lac-Chr10:2868922 Lac5g2527 Lac-Chr5:43827611 1.60E-40 dispersed
Lac10g0367 Lac-Chr10:2868922 Lac3g0633 Lac-Chr3:4903828 1.70E-87 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22723 PF03106 WRKY 1.50E-23 CL0274 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g0367 - - - 0.0