Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g0368 ATGCAAGGGATTGATGTGGACAACTCAATACCAGCCCAAGGAGATAGTCAGGAAATGAAATCCGAAGGAAGAACAGGCCAAACGGTCGGGCCAAAGCCGAAAGGATCGGGCTTATGGCACGACCCCCTGCTCGGCCAAGTAAGGCAGAGTAAGAAACCCTCTTTCCTCTTTGAGCTTCAGCAGCTTTGCATCGCATCTATCGATCTCTCTGGATCATGGCGCCGGTTTTGTCTCGGTTACTTCTCCGACGGAATCTTCAGACACCATTTTTTAGCGCCTCCATCGGATTTAACTCTTGCAGAAGTGGAGCAAATTTCAGGTTCTAAGCCAGGAGAAGTTCACAACTTGGTGCAGGGTAAATGGATTCAATCTTCTGGTTGGAATACTATTCTGGATCCTTTAAATGGAGAACCATTCATCAAAGTTGCCGAAGTCGATGAAACAGAAATTCAGCCATTTGTGAAGAGTCTGAACAAATGCCCCAAGCATGGCCTACATAATCCTTTCAAATCACCCGAGAGATACCTTATGTTTGGAGATGTATCTTCCAAGGCTGCCGACGTGCTTTCCAAGCCAGAGGTGACTGACTTTTTTGCAAGGTTGATTCAAAGAGTTTCTCCAAAAAGTTATCAACAAGCTTGTGCTGAAGTAAATGTTACTGTAAAATTTCTACGGAACTTCTCTGGTGATCAGGTTCGCTTCTTGGCAAGGTCCTTTGCCATACCCGGTGATCATCTTGGACAACACAGTCATGGTTTCCGTTGGCCTTATGGACCCGTTGCAATCATCACTCCTTTCAACTTTCCCTTGGAAATTCCTGTACTTCAGCTCATGGGTGCACTTTACATGGGCAACAAACCTGTTTTAAAAGTTGATAGCAAGGTTAGCATAGTTATGGAGCAAATGATTCGATTGCTTCATCATTGTGGGCTACCTCTAGAAGATTTGGATTTTATAAATTGTGATGGGAAGACAATGAACAGGTTCCTGCTGGAGGCAAATCCATCTATGACTCTTTTCACTGGTAGCTCAAGGGTGGCAGATAAGTTGGCCGTTGACTTGAAGGGCCGCATTAAATTGGAAGATGCAGGTTTTGATTGGAAAATCTTAGGACCAGATGTTCAAGAGGAAGATTATGTTGCATGGGTTTGTGATCAAGATGCATATGCTTGTAGTGGCCAGAAATGCTCAGCACAGTCGATACTGTTCATGCATGAGAATTGGTCGGCAACTTCACTTATTTCGAAGATAAAGGATCTTGCAGAGAGAAGAAATTTGACTGATTTAACGATTGGCCCAGTCCTTACATTCACTAATGAAATGATACTAGATCACATGAATAAGTTGCTCAAGATACCAGGGGCAAAGTTACTATTTGGAGGCGAACCTCTTAAAAACCATTCCATTCCACCAATATATGGTGCTATAAAACCCACTGCAGTATATATTCCGCTTGAAGAAATGATGAAAGATGACAATTATGAGCTTGTGACCAAAGAAATTTTTGGACCATTCCAGATTATTACTGAATATAAGAAAGATCAACTGTCAACCGTGTTGGATGCTCTTGAGCGTATGCATGCTCATCTAACCGCGGCTGTGGTTTCAAATGACCCTCTATTTTTGCAGGAAGTAATTGGGAATACTGTGAACGGAACGACATATGCCGGTTTACGAGCAAGAACAACTGGAGCTCCACAAAACCATTGGTTTGGACCAGCAGGAGATCCCAGAGGTGCAGGTATCGGGACCCCGGAAGCGATCAAACTCGTATGGTCTTGCCATAGAGAGATCATATATGACAATGGCCCGTTGCCCGCACACTGGACAATCCCACCATCGACTTGA 1848 43.89 MQGIDVDNSIPAQGDSQEMKSEGRTGQTVGPKPKGSGLWHDPLLGQVRQSKKPSFLFELQQLCIASIDLSGSWRRFCLGYFSDGIFRHHFLAPPSDLTLAEVEQISGSKPGEVHNLVQGKWIQSSGWNTILDPLNGEPFIKVAEVDETEIQPFVKSLNKCPKHGLHNPFKSPERYLMFGDVSSKAADVLSKPEVTDFFARLIQRVSPKSYQQACAEVNVTVKFLRNFSGDQVRFLARSFAIPGDHLGQHSHGFRWPYGPVAIITPFNFPLEIPVLQLMGALYMGNKPVLKVDSKVSIVMEQMIRLLHHCGLPLEDLDFINCDGKTMNRFLLEANPSMTLFTGSSRVADKLAVDLKGRIKLEDAGFDWKILGPDVQEEDYVAWVCDQDAYACSGQKCSAQSILFMHENWSATSLISKIKDLAERRNLTDLTIGPVLTFTNEMILDHMNKLLKIPGAKLLFGGEPLKNHSIPPIYGAIKPTAVYIPLEEMMKDDNYELVTKEIFGPFQIITEYKKDQLSTVLDALERMHAHLTAAVVSNDPLFLQEVIGNTVNGTTYAGLRARTTGAPQNHWFGPAGDPRGAGIGTPEAIKLVWSCHREIIYDNGPLPAHWTIPPST 615
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2886101 2893032 + Lag0024413.1 Lac10g0368 582899

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g0368 615 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 365 556 IPR016163 GO:0016620(InterPro)
Lac10g0368 615 Pfam Aldehyde dehydrogenase family 129 556 IPR015590 GO:0016491(InterPro)
Lac10g0368 615 FunFam Aldehyde dehydrogenase 12 372 560 - -
Lac10g0368 615 PANTHER ALPHA-AMINOADIPIC SEMIALDEHYDE DEHYDROGENASE 112 609 IPR044638 GO:0003842(PANTHER)|GO:0004029(InterPro)|GO:0005739(PANTHER)|GO:0010133(PANTHER)
Lac10g0368 615 MobiDBLite consensus disorder prediction 1 24 - -
Lac10g0368 615 MobiDBLite consensus disorder prediction 1 37 - -
Lac10g0368 615 SUPERFAMILY ALDH-like 113 583 IPR016161 GO:0016491(InterPro)
Lac10g0368 615 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 389 400 IPR016160 GO:0016491(InterPro)
Lac10g0368 615 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 106 364 IPR016162 GO:0016491(InterPro)
Lac10g0368 615 FunFam probable aldehyde dehydrogenase 106 364 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g0368 K00294 - - csv:101214440 1006.13
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0368 Lac-Chr10:2886101 Lac3g1824 Lac-Chr3:20163066 1.10E-09 dispersed
Lac10g0368 Lac-Chr10:2886101 Lac7g1246 Lac-Chr7:11632268 4.50E-11 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g517 . Blo16g00194 . . . Bpe13g00279 . . Cmo13g00961 . . . . . . Cpe20g00200 . . . . . . . . . . . . . . . . Cone16ag0152 . . . Csa01g00788 Chy12g01328 Cme12g01755 . . Bda11g01689 . . . . . Sed08g2576 . . Cma13g00931 . Car13g00771 . . . Bhi08g01409 Tan05g2088 Cmetu12g1329 Lac10g0368 . . . Cla01g01428 Cam01g1495 Cec01g1535 Cco01g1581 Clacu01g1519 Cmu01g1411 Cre01g1329 . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac3g0889 . 1 502 Aldehyde Dehydrogenase Gene Family AT3G24503 72.4 2.0e-214 742.7
Lac6g1384 . 34 535 Aldehyde Dehydrogenase Gene Family AT3G24503 54.7 4.3e-161 565.5
Lac3g0696 . 66 550 Aldehyde Dehydrogenase Gene Family AT3G24503 54.3 4.6e-155 545.4
Lac3g0696 . 1 550 Aldehyde Dehydrogenase Gene Family AT3G48000 78.7 1.2e-257 886.3
Lac6g1384 . 1 535 Aldehyde Dehydrogenase Gene Family AT3G48000 76.8 2.0e-249 859.0
Lac3g0889 . 18 502 Aldehyde Dehydrogenase Gene Family AT3G48000 55.7 6.4e-163 571.6
Lac6g1384 . 1 379 Aldehyde Dehydrogenase Gene Family AT1G23800 77.9 8.3e-171 597.4
Lac3g0696 . 1 394 Aldehyde Dehydrogenase Gene Family AT1G23800 73.6 3.0e-168 589.0
Lac3g0889 . 18 346 Aldehyde Dehydrogenase Gene Family AT1G23800 55.3 2.5e-103 373.2
Lac2g0944 . 108 581 Aldehyde Dehydrogenase Gene Family AT4G34240 65.8 6.2e-182 634.8
Lac2g0944 . 169 581 Aldehyde Dehydrogenase Gene Family AT1G44170 73.6 7.0e-181 630.9
Lac5g2068 . 61 475 Aldehyde Dehydrogenase Gene Family AT1G44170 52.0 3.4e-119 426.0
Lac9g2833 . 65 481 Aldehyde Dehydrogenase Gene Family AT1G44170 51.3 1.4e-117 420.6
Lac5g2068 . 1 477 Aldehyde Dehydrogenase Gene Family AT4G36250 64.2 5.2e-188 654.8
Lac9g2833 . 1 483 Aldehyde Dehydrogenase Gene Family AT4G36250 55.5 1.6e-157 553.5
Lac9g2296 . 36 509 Aldehyde Dehydrogenase Gene Family AT1G79440 71.1 9.9e-209 723.8
Lac12g0096 . 1 503 Aldehyde Dehydrogenase Gene Family AT2G14170 80.9 4.4e-237 818.1
Lac1g2767 . 8 315 Aldehyde Dehydrogenase Gene Family AT2G14170 59.4 5.4e-102 369.4
Lac1g2765 . 177 368 Aldehyde Dehydrogenase Gene Family AT2G14170 60.6 1.1e-62 238.8
Lac3g0667 . 1 501 Aldehyde Dehydrogenase Gene Family AT1G74920 81.0 1.2e-251 866.3
Lac3g0667 . 1 503 Aldehyde Dehydrogenase Gene Family AT3G48170 82.3 1.1e-257 886.3
Lac6g2850 . 1 496 Aldehyde Dehydrogenase Gene Family AT2G24270 90.1 2.2e-266 915.2
Lac10g0368 . 101 615 Aldehyde Dehydrogenase Gene Family AT5G62530 80.4 2.1e-257 885.6
Lac11g0932 . 1510 1929 Aldehyde Dehydrogenase Gene Family AT3G66658 76.0 2.4e-195 679.5
Lac11g0932 . 34 204 Aldehyde Dehydrogenase Gene Family AT3G66658 80.1 6.6e-76 282.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011636 1 3 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 30