Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g0370 ATGAGAGAGACAGAAACCACCATTGTTGTGCTTAAGCTGCTAATGATATTTGCTTTTGTAATGATATTCCCAACCCTTAATGCTAATATTGCAAATTTTGATGAGGTATGGCAGAAAAGAGCTGAAGAAGCCAAGAAGGCTGCCTATGAGGCATACCAGTCCCATCCAGAAGAAGTCACTGATAATTTCAACAAGCAAGTTCACAGTTCCTTCAATGGTGCAAATAACACAAGGAGACATTTGAAGAAGTACAATGGTCCATGTTTAGCTACGAATCCTATCGACCGATGTTGGAGATGTGATAAACATTGGGCTAAAAACCGCAAGAAGCTAGCTGATTGTGCCCTTGGCTTTGGCCGTGGAACGACTGGAGGCAAAGATGGAAGATATTATGTGGTCCAAGATTCAAGTGACAACGACTTGCTTAATCCTAAACCGGGAACCTTGCGCTACGGTGTGATACAGGATAGACCACTTTGGATTATATTTGCACATGACATGGTGATTAGGCTGAGTGAAGAGCTTATAATGACTGATAACAAGACATTAGATGGACGTGGTGCCAATGTGCACATCGCTAATGGAGGTCAAATCACTCTACAATTTGTGAAGAACATAATCATCCATAATCTGCACATTCATGATATCAAGGCTGGCAATGGAGGCCTTGTAAGAGACTCGGTGAACCACTATGGACTTCGAACACCGAGCGATGGTGATGGCATCTCGATGTTTGGAGCCTCCAAGGTTTGGATAGATCATGTTTCAATGTCTAATTGTCAAGATGGACTTATAGATGCAGTCATGGCATCTACTGGCATTACCATCTCCAACTGTCACTTCACCCACCATAACGATGTGATATTATTAGGTGCAAGTGATAGCTACTCGGAAGATCAGATTCTGCAGGTAACTCTTGCATTTAATCACTTTGGTAAGGGGTTGGTGCAAAGGATGCCAAGATGCCGATGGGGGTTCGTCCATGTAGTCAATAATGACTACACTCACTGGCTTATGTACGCCATTGGCGGCAGCCACAATCCCACCATTGTCAGTCAGGGCAATCGCTTCATTGCCCCACCAGACCCAAATTGCAAAGAGGTGACGAAGAGGGCGTACGCACCAGAAAGCGAGTGGAGATCGTGGAACTGGAGATCGGAGGGAGATCTGATGATGAATGGAGCTTTCTTCGTCCAATCTGGGAACCCCATCAGGAAATACTCCAAGAAAGATGTTATCCATGCAAAACCTGGGACCTTTGTGAGCAGGCTTACACGATTCTCTGGGCCTTTGAAATGCATAAGAAACAAGCCTTGTTAG 1320 44.55 MRETETTIVVLKLLMIFAFVMIFPTLNANIANFDEVWQKRAEEAKKAAYEAYQSHPEEVTDNFNKQVHSSFNGANNTRRHLKKYNGPCLATNPIDRCWRCDKHWAKNRKKLADCALGFGRGTTGGKDGRYYVVQDSSDNDLLNPKPGTLRYGVIQDRPLWIIFAHDMVIRLSEELIMTDNKTLDGRGANVHIANGGQITLQFVKNIIIHNLHIHDIKAGNGGLVRDSVNHYGLRTPSDGDGISMFGASKVWIDHVSMSNCQDGLIDAVMASTGITISNCHFTHHNDVILLGASDSYSEDQILQVTLAFNHFGKGLVQRMPRCRWGFVHVVNNDYTHWLMYAIGGSHNPTIVSQGNRFIAPPDPNCKEVTKRAYAPESEWRSWNWRSEGDLMMNGAFFVQSGNPIRKYSKKDVIHAKPGTFVSRLTRFSGPLKCIRNKPC 439
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2904891 2906717 - Lag0024415.1 Lac10g0370 582901
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g0370 439 PRINTS Pollen allergen Amb family signature 114 131 IPR018082 -
Lac10g0370 439 PRINTS Pollen allergen Amb family signature 138 163 IPR018082 -
Lac10g0370 439 PRINTS Pollen allergen Amb family signature 174 190 IPR018082 -
Lac10g0370 439 PRINTS Pollen allergen Amb family signature 382 406 IPR018082 -
Lac10g0370 439 PRINTS Pollen allergen Amb family signature 318 337 IPR018082 -
Lac10g0370 439 PRINTS Pollen allergen Amb family signature 238 259 IPR018082 -
Lac10g0370 439 PRINTS Pollen allergen Amb family signature 340 359 IPR018082 -
Lac10g0370 439 Pfam Pectate lyase, N terminus 29 81 IPR007524 GO:0030570(InterPro)
Lac10g0370 439 SUPERFAMILY Pectin lyase-like 80 433 IPR011050 -
Lac10g0370 439 Pfam Pectate lyase 177 357 IPR002022 -
Lac10g0370 439 PANTHER PECTATE LYASE 18-RELATED 19 435 IPR045032 GO:0030570(InterPro)
Lac10g0370 439 SMART amb_all 166 363 IPR002022 -
Lac10g0370 439 Gene3D - 91 432 IPR012334 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0370 Lac-Chr10:2904891 Lac8g0534 Lac-Chr8:7687450 3.70E-177 dispersed
Lac10g0370 Lac-Chr10:2904891 Lac13g0288 Lac-Chr13:2053129 2.80E-164 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g0370 K01728 - csv:101218812 810.446