Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g0375 ATGGCGGGTCGGAGGGTCTACGGCGGCGGCGGCGACGACGGTGGTAGTATAAGTGGTGGTTCTTCCAACCATAGTGTTTTGCTTCAGAATCGTAGAGGGTCTTTCGCTTCTGAGCCTCTTAATGCTCTGTTCCTTTCTGGGTCATCTTCTTCTACTTCCCCCTCTCTGCTCGGTTCAAGATCCATGATGAGTTTTGAAGATATTCGTGGAGGAAATGGATCGAATAGGTCGTTCTTTTGCCCGTTCGATAGCGAAGATAATGGGGATGAAGACTTGGATGATTATTTCCATCACCCTGAAAAGAAGAGGCGATTAACTGCTGATCAGGTCCGGTTCCTCGAAAAGAGTTTCGAGATCGAGAACAAGCTCGAACCCGAAAGGAAAGTTCAATTAGCAAAGGACCTCGGGCTGCAGCCTCGTCAGGTTGCTATATGGTTTCAGAATCGCCGAGCACGGTGGAAAACTAAACAGCTGGAGAAGGACTATGAGGCTCTTCAATCCAGCTATGGAAGCCTCAAGGTTGACTATGAAAACCTACTCAAGGAGAAGGATTCACTTAAAGCTGAGATTCTTCTCCTAACAGACAAGCTGCTACACAAAGAAAAAGAAAGGGGCAATTCTGTGCTGTCTGAGGTTGACAAATTTGCTGAAGAACCACCACATAATTTGGTTGCTGATTCACATTTGGAGGATGAAGTTTCCAAATCTCCAAAGCTGGCTTGTAAGCAGGAAGATATCAGTTCAGTCAAAAGTGATATATTTGATTCAGATAGCCCACACTACACTGATGGGGTTCACTCTTCACTCCTAGAGCCTGGCGATTCTTCCTATATTTTCGATCCCGATCAGTCCGACTTATCGCAAGACGAAGAAGACAACTTGGGAAAGAATCTATTGCCTACTTACATCTTCCCAAAGCTCGAAGATGTCGATTACTCTGACCCGCCCACAAGTACTTGTAATTTTGTATTCCCCATTGAAGACAATGCCCTTTGGTCCTGGTCTTAG 1008 45.73 MAGRRVYGGGGDDGGSISGGSSNHSVLLQNRRGSFASEPLNALFLSGSSSSTSPSLLGSRSMMSFEDIRGGNGSNRSFFCPFDSEDNGDEDLDDYFHHPEKKRRLTADQVRFLEKSFEIENKLEPERKVQLAKDLGLQPRQVAIWFQNRRARWKTKQLEKDYEALQSSYGSLKVDYENLLKEKDSLKAEILLLTDKLLHKEKERGNSVLSEVDKFAEEPPHNLVADSHLEDEVSKSPKLACKQEDISSVKSDIFDSDSPHYTDGVHSSLLEPGDSSYIFDPDQSDLSQDEEDNLGKNLLPTYIFPKLEDVDYSDPPTSTCNFVFPIEDNALWSWS 335
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2929338 2930986 + Lag0024420.1 Lac10g0375 582906

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g0375 335 SUPERFAMILY Homeodomain-like 84 158 IPR009057 -
Lac10g0375 335 PRINTS Lambda-repressor HTH signature 127 136 IPR000047 GO:0003677(InterPro)
Lac10g0375 335 PRINTS Lambda-repressor HTH signature 136 152 IPR000047 GO:0003677(InterPro)
Lac10g0375 335 ProSiteProfiles 'Homeobox' domain profile. 96 156 IPR001356 GO:0003677(InterPro)
Lac10g0375 335 ProSitePatterns 'Homeobox' domain signature. 131 154 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Lac10g0375 335 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 82 257 IPR045224 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)|GO:0045893(PANTHER)
Lac10g0375 335 SMART HOX_1 99 160 IPR001356 GO:0003677(InterPro)
Lac10g0375 335 Coils Coil 169 196 - -
Lac10g0375 335 CDD homeodomain 101 157 IPR001356 GO:0003677(InterPro)
Lac10g0375 335 Gene3D - 96 163 - -
Lac10g0375 335 MobiDBLite consensus disorder prediction 1 24 - -
Lac10g0375 335 FunFam Homeobox-leucine zipper protein HAT5 94 158 - -
Lac10g0375 335 Pfam Homeobox associated leucine zipper 156 197 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Lac10g0375 335 Pfam Homeodomain 101 154 IPR001356 GO:0003677(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g0375 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0375 Lac-Chr10:2929338 Lac6g0056 Lac-Chr6:467703 9.90E-37 dispersed
Lac5g2067 Lac-Chr5:39191312 Lac10g0375 Lac-Chr10:2929338 1.90E-20 transposed
Lac8g0332 Lac-Chr8:4019362 Lac10g0375 Lac-Chr10:2929338 1.30E-34 transposed
Lac8g2600 Lac-Chr8:43637896 Lac10g0375 Lac-Chr10:2929338 8.20E-29 transposed
Lac1g2802 Lac-Chr1:49109105 Lac10g0375 Lac-Chr10:2929338 3.80E-25 wgd
Lac10g0375 Lac-Chr10:2929338 Lac13g0276 Lac-Chr13:1979028 1.20E-21 wgd
Lac10g0375 Lac-Chr10:2929338 Lac8g2671 Lac-Chr8:44187497 2.30E-25 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g499 Blo04g00758 Blo16g00197 . . . Bpe13g00275 . . Cmo13g00956 Cmo18g00098 . . . . . Cpe20g00203 . . . . . . . . . . . . . . . . Cone16ag0147 . Cone19ag0090 Lsi02g00316 Csa01g00793 Chy12g01323 Cme12g01748 . . . Bda14g00838 . Bpe15g00614 Bma03g00813 . . . . Cma13g00928 Cma18g00128 Car13g00767 Car18g00118 Cpe09g01065 . Bhi08g01418 Tan05g2080 . Lac10g0375 . . . Cla01g01422 Cam01g1489 Cec04g1119 Cco01g1575 Clacu01g1513 Cmu01g1405 Cre01g1323 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003231 3 2 3 3 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 3 3 2 50
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22724 PF00046 Homeodomain 6.00E-17 CL0123 Lac TF