Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g0381 ATGGGGGAAAAGCCAGAAGTGTTGGAGGCCGTGTTGAAGGAAGCTGTGGATTTGGAAAATATACCCATTGATGAGGTTTTTGAAAACCTGAGATGTAGCAAAGAGGGTCTTACCAGTGAGGCTGCTGAGGAACGGCTGAAGATTTTTGGCCACAACAAGCTTGAGGAAAAGAAGGAAAGCAAAGTTTTGAAGTTTTTGGGATTCATGTGGAATCCTCTATCATGGGTTATGGAAGCTGCTGCAATTATGGCTATTGCACTTGCAAATGGAGGAGGAAAGCCCCCCGACTGGCAAGATTTTGTGGGTATCATTACCTTGCTTATCATCAACTCGACAATCAGTTTCATTGAGGAAAACAATGCAGGAAACGCTGCAGCTGCTCTCATGGCTCGTCTTGCTCCCAAAGCCAAGGTTCTTCGAGATGGAAGGTGGAGCGAGCAAGATGCTTCCATTTTAGTTCCTGGTGACGTAGTCAGTGTTAAACTTGGAGATATTATTCCAGCTGATGCACGTCTTCTGGATGGGGATCCACTAAAAATTGACCAGTCTGCGCTTACAGGTGAATCTCTCCCTGTCACGAAAGGTCCTGGCGATGGTGTGTACTCTGGTTCCACTTGTAAGCAAGGAGAGATTGAAGCTGTGGTCATTGCTACTGGTGTCCACACCTTTTTTGGTAAAGCTGCTCATCTTGTTGACACCACCAACCAAGTGGGACACTTCCAAAAGGTCTTGACTGCCATAGGGAATTTCTGCATATGTTCCATTGCTTTGGGGATGGTAATTGAGATCATTGTCATGTACCCAATTCAGGACCGTGAGTATCGTCCCGGAATTGATAACCTCCTTGTGCTATTGATTGGAGGAATTCCAATAGCCATGCCTACAGTTCTCTCTGTGACAATGGCTATTGGTTCTCATAGGTTATCCCAACAGGGTGCCATCACAAAAAGGATGACCGCTATTGAAGAAATGGCAGGCATGGATGTGCTTTGCAGTGATAAGACAGGAACCCTGACATTGAACAAGTTAACTGTTGACAAAAATCTTGTTGAGGTTTTCAGTAAAGGGATAGATGCAGACACTGTGGTTCTAATGGCTGCTCGAGCATCAAGAACTGAAAATCAAGATGCTATTGATACTGCAATTGTTGGGATGCTAGCTGATCCAAAGGAGGCACGTGCTGGCATTCAGGAAGTACATTTCCTTCCTTTCAATCCTACTGATAAGCGAACAGCATTGACTTATATTGACCATGAGGGCAAGATGCACAGAGTCAGTAAAGGTGCACCAGAACAGATTCTAAATCTCGCATACAACAAGTCAGAGATTGAGAGAAAAGTTCATGCAGTGATTGATAAATTTGCTGAACGAGGTCTGCGTTCACTTGCTGTAGCATACCAGGAAGTTCCAGAAGGAAGGAAAGAAAGTGCTGGAGGTCCTTGGCAATTCATGGGCCTCTTGCCTTTGTTTGACCCACCAAGGCATGATAGTGCAGAGACCATAAGGAGAGCTTTAAATCTTGGAGTAAATGTGAAAATGATTACCGGAGATCAACTGGCCATAGGAAAGGAAACAGGACGTCGATTGGGGATGGGAACCAACATGTATCCATCATCTGCTTTGCTAGGACAGGAAAAGGATGAGTCCATTGCTGCTTTACCTGTTGATGACCTTATTGAAAAAGCAGATGGTTTTGCCGGTGTATTCCCTGAGCATAAATACGAGATCGTAAAACGCTTGCAAGCTATGAAACATATCTGTGGGATGACTGGTGATGGAGTGAATGATGCTCCTGCACTTAAAAAAGCAGACATAGGTATAGCTGTTGCAGATGCAACTGATGCTGCTCGCAGTGCTTCTGATATTGTCCTCACTGAACCTGGTCTCAGTGTTATCATCAGTGCCGTTTTGACCAGTCGAGCGATATTTCAGAGGATGAAGAATTACACGATTTATGCAGTTTCCATTACAATACGTATTGTGCTTGGTTTTATGTTGCTGGCCCTCATTTGGAAGTTTGATTTTCCACCATTTATGGTGCTTATCATTGCTATCCTCAACGATGGTACAATCATGACAATATCAAAGGATAGAGTTAAACCATCTCCTTTGCCAGATAGTTGGAAGCTGGCTGAAATCTTTACTACTGGCATTGTACTTGGTAGTTACTTGGCAATGATGACGGTCATATTTTTTTGGGCATCGTATAAAACTAACTTTTTCCCTCGAGTCTTTGGGGTGCCAACCCTTGAAAAAACAGCTCATGATGACTTCCGGAAGCTAGCCTCAGCTATATATCTGCAAGTGAGCACTATCAGTCAAGCCCTCATTTTTGTTACACGATCTCGGAGTTGGTCCTACGTCGAGCGTCCTGGGCTGTTTCTTGTAGTGGCTTTTATACTTGCTCAACTGGTTGCCACTCTGATTGCTGTGTATGCTAATTGGAGTTTTGCTGCCATTGAAGGAATTGGTTGGGGTTGGGCTGGTGTCATTTGGCTTTACAACATCATCTTTTATATTCCTCTTGATCCCATTAAGTTTGCTATTCGATATGCTTTGAGTGGGAAAGCTTGGGATCTCATGCTTGAGCAAAGGGTTGCTTTCACAAGACAAAAGGATTTCGGAAAGGAACAACGTGAGCTGCAATGGGCTCACGCACAAAGAACGCTACACGGTTTGCAACCGCCTGATACTAAGATGTTCACTGAGCGGACTCATTTCACAGAACTCAATCACATGGCTGAAGAAGCCAAAAGGAGAGCTGAAATTGCTAGATTGAGGGAACTCCATACACTGAAAGGTCATGTAGAATCAGTGGTGAGATTGAAGGGTCTCGATATCGAAACGATTCAACAAGCATACACCGTGTGA 2871 44.17 MGEKPEVLEAVLKEAVDLENIPIDEVFENLRCSKEGLTSEAAEERLKIFGHNKLEEKKESKVLKFLGFMWNPLSWVMEAAAIMAIALANGGGKPPDWQDFVGIITLLIINSTISFIEENNAGNAAAALMARLAPKAKVLRDGRWSEQDASILVPGDVVSVKLGDIIPADARLLDGDPLKIDQSALTGESLPVTKGPGDGVYSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDTTNQVGHFQKVLTAIGNFCICSIALGMVIEIIVMYPIQDREYRPGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDKNLVEVFSKGIDADTVVLMAARASRTENQDAIDTAIVGMLADPKEARAGIQEVHFLPFNPTDKRTALTYIDHEGKMHRVSKGAPEQILNLAYNKSEIERKVHAVIDKFAERGLRSLAVAYQEVPEGRKESAGGPWQFMGLLPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSALLGQEKDESIAALPVDDLIEKADGFAGVFPEHKYEIVKRLQAMKHICGMTGDGVNDAPALKKADIGIAVADATDAARSASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVLGFMLLALIWKFDFPPFMVLIIAILNDGTIMTISKDRVKPSPLPDSWKLAEIFTTGIVLGSYLAMMTVIFFWASYKTNFFPRVFGVPTLEKTAHDDFRKLASAIYLQVSTISQALIFVTRSRSWSYVERPGLFLVVAFILAQLVATLIAVYANWSFAAIEGIGWGWAGVIWLYNIIFYIPLDPIKFAIRYALSGKAWDLMLEQRVAFTRQKDFGKEQRELQWAHAQRTLHGLQPPDTKMFTERTHFTELNHMAEEAKRRAEIARLRELHTLKGHVESVVRLKGLDIETIQQAYTV 956
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2961247 2966298 - Lag0024426.1 Lac10g0381 582912
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g0381 956 SFLD Haloacid Dehalogenase 313 641 - -
Lac10g0381 956 ProSitePatterns E1-E2 ATPases phosphorylation site. 333 339 IPR018303 -
Lac10g0381 956 Pfam E1-E2 ATPase 132 310 - -
Lac10g0381 956 Gene3D - 343 490 IPR023299 GO:0000166(InterPro)
Lac10g0381 956 SMART Cation_ATPase_N_a_2 17 89 IPR004014 -
Lac10g0381 956 PANTHER CALCIUM-TRANSPORTING ATPASE 19 904 - GO:0005886(PANTHER)|GO:0008553(PANTHER)|GO:0015662(PANTHER)|GO:0016021(PANTHER)|GO:0034220(PANTHER)|GO:0051453(PANTHER)|GO:1902600(PANTHER)
Lac10g0381 956 FunFam Plasma membrane ATPase 343 490 - -
Lac10g0381 956 Pfam haloacid dehalogenase-like hydrolase 327 604 - -
Lac10g0381 956 NCBIfam HAD-IC family P-type ATPase 565 678 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Lac10g0381 956 NCBIfam HAD-IC family P-type ATPase 103 538 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Lac10g0381 956 NCBIfam plasma-membrane proton-efflux P-type ATPase 36 812 IPR006534 GO:0008553(InterPro)|GO:0016020(InterPro)|GO:0120029(InterPro)
Lac10g0381 956 FunFam Plasma membrane ATPase 134 218 - -
Lac10g0381 956 Pfam Cation transporter/ATPase, N-terminus 20 83 IPR004014 -
Lac10g0381 956 SUPERFAMILY HAD-like 327 637 IPR036412 -
Lac10g0381 956 CDD P-type_ATPase_H 36 847 IPR006534 GO:0008553(InterPro)|GO:0016020(InterPro)|GO:0120029(InterPro)
Lac10g0381 956 Gene3D - 134 218 - -
Lac10g0381 956 Gene3D - 328 627 IPR023214 -
Lac10g0381 956 SUPERFAMILY Calcium ATPase, transmembrane domain M 17 853 IPR023298 -
Lac10g0381 956 PRINTS H+-transporting ATPase (proton pump) signature 766 787 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Lac10g0381 956 PRINTS H+-transporting ATPase (proton pump) signature 590 606 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Lac10g0381 956 PRINTS H+-transporting ATPase (proton pump) signature 621 646 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Lac10g0381 956 PRINTS H+-transporting ATPase (proton pump) signature 447 465 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Lac10g0381 956 PRINTS H+-transporting ATPase (proton pump) signature 562 578 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Lac10g0381 956 Gene3D - 96 821 - -
Lac10g0381 956 FunFam Plasma membrane ATPase 484 638 - -
Lac10g0381 956 Gene3D - 905 956 - -
Lac10g0381 956 SUPERFAMILY Calcium ATPase, transduction domain A 134 231 IPR008250 -
Lac10g0381 956 PRINTS P-type cation-transporting ATPase superfamily signature 331 345 - -
Lac10g0381 956 PRINTS P-type cation-transporting ATPase superfamily signature 590 609 - -
Lac10g0381 956 PRINTS P-type cation-transporting ATPase superfamily signature 613 625 - -
Lac10g0381 956 PRINTS P-type cation-transporting ATPase superfamily signature 181 195 - -
Lac10g0381 956 PRINTS P-type cation-transporting ATPase superfamily signature 485 496 - -
Lac10g0381 956 PRINTS P-type cation-transporting ATPase superfamily signature 507 517 - -
Lac10g0381 956 FunFam ATPase 4 plasma membrane-type 584 821 - -
Lac10g0381 956 SFLD p-type atpase 313 641 IPR044492 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0381 Lac-Chr10:2961247 Lac6g1186 Lac-Chr6:11288308 0.00E+00 dispersed
Lac10g0381 Lac-Chr10:2961247 Lac3g0642 Lac-Chr3:4975235 0.00E+00 wgd
Lac10g0381 Lac-Chr10:2961247 Lac8g2662 Lac-Chr8:44135151 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g0381 K01535 - csv:101214920 1803.1