Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g0417 ATGGCGGCTCTGCCATCCTCTTCTGCGCTACCGGATTCTTCTTCTTCCAGGCACCACACTTACAGCAGGAAGCAGAAATCACTTGGTCTTTTGTGCTCCAATTTTTTGAGCTTGTATAACCACGATGGAGTTCACTCGATTGGGCTTGACGATGCCGCGTCGCGATTAGGTGTGGAAAGGCGGCGGATCTATGATATTGTGAATGTCTTGGAGAGTGTCGGGGTTCTCTCGAGAAAGGCGAAGAATCAGTATAGCTGGAATGGGTTTGGGGCAATCCCTAAGGCATTACAAGATCTTAAGGAGGAGGGTTTGAAGGAGAATTGCAGTGCATCTGATGTTAACGATTATGCAAAAGTCTCGGATGATGAAGATGACGATGAAAGATTTTCCAATCCAACTGGAAGCCAGAACTCAACTGCCACCGTGCCCAAATCTTCATCGTCTCTAAAAGCCGACAATAGGAGGGAAAAGTCATTGGCGCTTCTGACGCAAAATTTTGTTAAGTTATTTATTTGCAGTCATGTGAATATGATTTCCCTCGACGAAGCTGCAAAGCTCTTATTAGGAGATGGCCACAATTCATCAATTATGAGAACAAAGGTAAGGCGGCTATATGACATTGCGAATGTGCTGTCTTCCATGAATCTAATTGAAAAGACCCATACGACTGACACAAGAAAGCCTGCGTTTAGATGGTTGGGTGTAAGGGGTAAAGTCAAGAATGAGCCTACCCTTCTTCCAGAGTCCAGAAAAAGGGCATTTGGAACTGATGTAACAAATGTCAGTTATAAGAAGACTAAGGCTGAAAATTCAGCCTATCAGAGTTTAAATCACTGCCTCAGCATGCAAAAGCTAGTGCAGTGCGAGAATTCTTCGCAAGAGGATAGCCAGAACAGTCAGGATCAGGAATGTGAACGAACTTCCAAGAGCTATCAATTTGGACCATTTGCTCCTGTAACAGTTGCCAAAGTTGGTGTCTCAGACAATAACAATGCGAAGCGGACTCATGACTGGGAAGGCCTTTCCTCAACATTCCGCCCTCAGTATCACAACCAAGCCTTAAAAGAACTTTTCTCCCATTACGTGGAAGCTTGGAAATCATGCTATCTCCTTTCCCCTACAGTGTTCAATGAAATTGGCGACTTCGCCTTTGTTGAAAAGTTTCTGGATGCAATTCTTGTGAAAGTAAATGAATACAAAGAAAATTTCCAATCAGAGAAGTTGGCTTATCTACCGCTCGCTGTCTGTGTTTCTTCCACTTGCTTCATGCCATCTGATTTCTGA 1284 43.93 MAALPSSSALPDSSSSRHHTYSRKQKSLGLLCSNFLSLYNHDGVHSIGLDDAASRLGVERRRIYDIVNVLESVGVLSRKAKNQYSWNGFGAIPKALQDLKEEGLKENCSASDVNDYAKVSDDEDDDERFSNPTGSQNSTATVPKSSSSLKADNRREKSLALLTQNFVKLFICSHVNMISLDEAAKLLLGDGHNSSIMRTKVRRLYDIANVLSSMNLIEKTHTTDTRKPAFRWLGVRGKVKNEPTLLPESRKRAFGTDVTNVSYKKTKAENSAYQSLNHCLSMQKLVQCENSSQEDSQNSQDQECERTSKSYQFGPFAPVTVAKVGVSDNNNAKRTHDWEGLSSTFRPQYHNQALKELFSHYVEAWKSCYLLSPTVFNEIGDFAFVEKFLDAILVKVNEYKENFQSEKLAYLPLAVCVSSTCFMPSDF 427
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3272637 3275593 + Lag0024462.1 Lac10g0417 582948

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g0417 427 FunFam E2F transcription factor 8 18 90 - -
Lac10g0417 427 Pfam E2F/DP family winged-helix DNA-binding domain 24 88 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Lac10g0417 427 Pfam E2F/DP family winged-helix DNA-binding domain 155 234 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Lac10g0417 427 MobiDBLite consensus disorder prediction 131 148 - -
Lac10g0417 427 PANTHER TRANSCRIPTION FACTOR E2F 9 360 IPR015633 GO:0000978(InterPro)|GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)|GO:0006357(InterPro)|GO:0090575(PANTHER)
Lac10g0417 427 FunFam E2F transcription factor-like E2FE 149 236 - -
Lac10g0417 427 SMART E2F_TDP_2 154 234 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Lac10g0417 427 SMART E2F_TDP_2 23 88 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Lac10g0417 427 SUPERFAMILY Winged helix DNA-binding domain 156 235 IPR036390 -
Lac10g0417 427 MobiDBLite consensus disorder prediction 115 151 - -
Lac10g0417 427 SUPERFAMILY Winged helix DNA-binding domain 22 86 IPR036390 -
Lac10g0417 427 Gene3D - 18 91 IPR036388 -
Lac10g0417 427 Gene3D - 149 236 IPR036388 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g0417 K09391 - - csv:101219210 682.174
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0417 Lac-Chr10:3272637 Lac1g2307 Lac-Chr1:44479315 2.20E-09 dispersed
Lac10g0417 Lac-Chr10:3272637 Lac3g0665 Lac-Chr3:5177653 6.10E-108 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac10g0417 . 3 369 E2F-DP Transcription Factor Family AT3G48160 56.1 3.0e-104 376.3
Lac5g2716 . 81 284 E2F-DP Transcription Factor Family AT5G02470 55.1 1.6e-59 227.3
Lac1g2307 . 11 449 E2F-DP Transcription Factor Family AT2G36010 55.7 2.5e-121 433.3
Lac9g2731 . 17 393 E2F-DP Transcription Factor Family AT2G36010 58.1 2.0e-110 397.1
Lac9g2731 . 12 398 E2F-DP Transcription Factor Family AT5G22220 58.2 1.6e-106 384.0
Lac6g0492 . 151 405 E2F-DP Transcription Factor Family AT1G47870 55.3 2.6e-68 256.9
Lac9g2731 . 91 367 E2F-DP Transcription Factor Family AT1G47870 51.3 5.6e-63 239.2
Lac5g2716 . 81 284 E2F-DP Transcription Factor Family AT5G02470 55.1 1.6e-59 227.3
Lac9g2731 . 12 398 E2F-DP Transcription Factor Family AT5G22220 58.2 1.6e-106 384.0
Lac1g2307 . 11 449 E2F-DP Transcription Factor Family AT2G36010 55.7 2.5e-121 433.3
Lac9g2731 . 17 393 E2F-DP Transcription Factor Family AT2G36010 58.1 2.0e-110 397.1
Lac6g0492 . 151 405 E2F-DP Transcription Factor Family AT1G47870 55.3 2.6e-68 256.9
Lac9g2731 . 91 367 E2F-DP Transcription Factor Family AT1G47870 51.3 5.6e-63 239.2
Lac10g0417 . 3 369 E2F-DP Transcription Factor Family AT3G48160 56.1 3.0e-104 376.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001341 2 8 2 2 1 2 3 2 2 2 2 2 2 2 2 3 2 4 3 2 2 1 2 2 2 2 2 5 4 2 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22728 PF02319 E2F_TDP 2.70E-20 CL0123 Lac TF