Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac10g0417 | ATGGCGGCTCTGCCATCCTCTTCTGCGCTACCGGATTCTTCTTCTTCCAGGCACCACACTTACAGCAGGAAGCAGAAATCACTTGGTCTTTTGTGCTCCAATTTTTTGAGCTTGTATAACCACGATGGAGTTCACTCGATTGGGCTTGACGATGCCGCGTCGCGATTAGGTGTGGAAAGGCGGCGGATCTATGATATTGTGAATGTCTTGGAGAGTGTCGGGGTTCTCTCGAGAAAGGCGAAGAATCAGTATAGCTGGAATGGGTTTGGGGCAATCCCTAAGGCATTACAAGATCTTAAGGAGGAGGGTTTGAAGGAGAATTGCAGTGCATCTGATGTTAACGATTATGCAAAAGTCTCGGATGATGAAGATGACGATGAAAGATTTTCCAATCCAACTGGAAGCCAGAACTCAACTGCCACCGTGCCCAAATCTTCATCGTCTCTAAAAGCCGACAATAGGAGGGAAAAGTCATTGGCGCTTCTGACGCAAAATTTTGTTAAGTTATTTATTTGCAGTCATGTGAATATGATTTCCCTCGACGAAGCTGCAAAGCTCTTATTAGGAGATGGCCACAATTCATCAATTATGAGAACAAAGGTAAGGCGGCTATATGACATTGCGAATGTGCTGTCTTCCATGAATCTAATTGAAAAGACCCATACGACTGACACAAGAAAGCCTGCGTTTAGATGGTTGGGTGTAAGGGGTAAAGTCAAGAATGAGCCTACCCTTCTTCCAGAGTCCAGAAAAAGGGCATTTGGAACTGATGTAACAAATGTCAGTTATAAGAAGACTAAGGCTGAAAATTCAGCCTATCAGAGTTTAAATCACTGCCTCAGCATGCAAAAGCTAGTGCAGTGCGAGAATTCTTCGCAAGAGGATAGCCAGAACAGTCAGGATCAGGAATGTGAACGAACTTCCAAGAGCTATCAATTTGGACCATTTGCTCCTGTAACAGTTGCCAAAGTTGGTGTCTCAGACAATAACAATGCGAAGCGGACTCATGACTGGGAAGGCCTTTCCTCAACATTCCGCCCTCAGTATCACAACCAAGCCTTAAAAGAACTTTTCTCCCATTACGTGGAAGCTTGGAAATCATGCTATCTCCTTTCCCCTACAGTGTTCAATGAAATTGGCGACTTCGCCTTTGTTGAAAAGTTTCTGGATGCAATTCTTGTGAAAGTAAATGAATACAAAGAAAATTTCCAATCAGAGAAGTTGGCTTATCTACCGCTCGCTGTCTGTGTTTCTTCCACTTGCTTCATGCCATCTGATTTCTGA | 1284 | 43.93 | MAALPSSSALPDSSSSRHHTYSRKQKSLGLLCSNFLSLYNHDGVHSIGLDDAASRLGVERRRIYDIVNVLESVGVLSRKAKNQYSWNGFGAIPKALQDLKEEGLKENCSASDVNDYAKVSDDEDDDERFSNPTGSQNSTATVPKSSSSLKADNRREKSLALLTQNFVKLFICSHVNMISLDEAAKLLLGDGHNSSIMRTKVRRLYDIANVLSSMNLIEKTHTTDTRKPAFRWLGVRGKVKNEPTLLPESRKRAFGTDVTNVSYKKTKAENSAYQSLNHCLSMQKLVQCENSSQEDSQNSQDQECERTSKSYQFGPFAPVTVAKVGVSDNNNAKRTHDWEGLSSTFRPQYHNQALKELFSHYVEAWKSCYLLSPTVFNEIGDFAFVEKFLDAILVKVNEYKENFQSEKLAYLPLAVCVSSTCFMPSDF | 427 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 3272637 | 3275593 | + | Lag0024462.1 | Lac10g0417 | 582948 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac10g0417 | 427 | FunFam | E2F transcription factor 8 | 18 | 90 | - | - | |
Lac10g0417 | 427 | Pfam | E2F/DP family winged-helix DNA-binding domain | 24 | 88 | IPR003316 | GO:0005667(InterPro)|GO:0006355(InterPro) | |
Lac10g0417 | 427 | Pfam | E2F/DP family winged-helix DNA-binding domain | 155 | 234 | IPR003316 | GO:0005667(InterPro)|GO:0006355(InterPro) | |
Lac10g0417 | 427 | MobiDBLite | consensus disorder prediction | 131 | 148 | - | - | |
Lac10g0417 | 427 | PANTHER | TRANSCRIPTION FACTOR E2F | 9 | 360 | IPR015633 | GO:0000978(InterPro)|GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)|GO:0006357(InterPro)|GO:0090575(PANTHER) | |
Lac10g0417 | 427 | FunFam | E2F transcription factor-like E2FE | 149 | 236 | - | - | |
Lac10g0417 | 427 | SMART | E2F_TDP_2 | 154 | 234 | IPR003316 | GO:0005667(InterPro)|GO:0006355(InterPro) | |
Lac10g0417 | 427 | SMART | E2F_TDP_2 | 23 | 88 | IPR003316 | GO:0005667(InterPro)|GO:0006355(InterPro) | |
Lac10g0417 | 427 | SUPERFAMILY | Winged helix DNA-binding domain | 156 | 235 | IPR036390 | - | |
Lac10g0417 | 427 | MobiDBLite | consensus disorder prediction | 115 | 151 | - | - | |
Lac10g0417 | 427 | SUPERFAMILY | Winged helix DNA-binding domain | 22 | 86 | IPR036390 | - | |
Lac10g0417 | 427 | Gene3D | - | 18 | 91 | IPR036388 | - | |
Lac10g0417 | 427 | Gene3D | - | 149 | 236 | IPR036388 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac10g0417 | Lac-Chr10:3272637 | Lac1g2307 | Lac-Chr1:44479315 | 2.20E-09 | dispersed | |
Lac10g0417 | Lac-Chr10:3272637 | Lac3g0665 | Lac-Chr3:5177653 | 6.10E-108 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
22728 | PF02319 | E2F_TDP | 2.70E-20 | CL0123 | Lac | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac10g0417 | K09391 | - | csv:101219210 | 682.174 |