Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g0417 ATGGCGGCTCTGCCATCCTCTTCTGCGCTACCGGATTCTTCTTCTTCCAGGCACCACACTTACAGCAGGAAGCAGAAATCACTTGGTCTTTTGTGCTCCAATTTTTTGAGCTTGTATAACCACGATGGAGTTCACTCGATTGGGCTTGACGATGCCGCGTCGCGATTAGGTGTGGAAAGGCGGCGGATCTATGATATTGTGAATGTCTTGGAGAGTGTCGGGGTTCTCTCGAGAAAGGCGAAGAATCAGTATAGCTGGAATGGGTTTGGGGCAATCCCTAAGGCATTACAAGATCTTAAGGAGGAGGGTTTGAAGGAGAATTGCAGTGCATCTGATGTTAACGATTATGCAAAAGTCTCGGATGATGAAGATGACGATGAAAGATTTTCCAATCCAACTGGAAGCCAGAACTCAACTGCCACCGTGCCCAAATCTTCATCGTCTCTAAAAGCCGACAATAGGAGGGAAAAGTCATTGGCGCTTCTGACGCAAAATTTTGTTAAGTTATTTATTTGCAGTCATGTGAATATGATTTCCCTCGACGAAGCTGCAAAGCTCTTATTAGGAGATGGCCACAATTCATCAATTATGAGAACAAAGGTAAGGCGGCTATATGACATTGCGAATGTGCTGTCTTCCATGAATCTAATTGAAAAGACCCATACGACTGACACAAGAAAGCCTGCGTTTAGATGGTTGGGTGTAAGGGGTAAAGTCAAGAATGAGCCTACCCTTCTTCCAGAGTCCAGAAAAAGGGCATTTGGAACTGATGTAACAAATGTCAGTTATAAGAAGACTAAGGCTGAAAATTCAGCCTATCAGAGTTTAAATCACTGCCTCAGCATGCAAAAGCTAGTGCAGTGCGAGAATTCTTCGCAAGAGGATAGCCAGAACAGTCAGGATCAGGAATGTGAACGAACTTCCAAGAGCTATCAATTTGGACCATTTGCTCCTGTAACAGTTGCCAAAGTTGGTGTCTCAGACAATAACAATGCGAAGCGGACTCATGACTGGGAAGGCCTTTCCTCAACATTCCGCCCTCAGTATCACAACCAAGCCTTAAAAGAACTTTTCTCCCATTACGTGGAAGCTTGGAAATCATGCTATCTCCTTTCCCCTACAGTGTTCAATGAAATTGGCGACTTCGCCTTTGTTGAAAAGTTTCTGGATGCAATTCTTGTGAAAGTAAATGAATACAAAGAAAATTTCCAATCAGAGAAGTTGGCTTATCTACCGCTCGCTGTCTGTGTTTCTTCCACTTGCTTCATGCCATCTGATTTCTGA 1284 43.93 MAALPSSSALPDSSSSRHHTYSRKQKSLGLLCSNFLSLYNHDGVHSIGLDDAASRLGVERRRIYDIVNVLESVGVLSRKAKNQYSWNGFGAIPKALQDLKEEGLKENCSASDVNDYAKVSDDEDDDERFSNPTGSQNSTATVPKSSSSLKADNRREKSLALLTQNFVKLFICSHVNMISLDEAAKLLLGDGHNSSIMRTKVRRLYDIANVLSSMNLIEKTHTTDTRKPAFRWLGVRGKVKNEPTLLPESRKRAFGTDVTNVSYKKTKAENSAYQSLNHCLSMQKLVQCENSSQEDSQNSQDQECERTSKSYQFGPFAPVTVAKVGVSDNNNAKRTHDWEGLSSTFRPQYHNQALKELFSHYVEAWKSCYLLSPTVFNEIGDFAFVEKFLDAILVKVNEYKENFQSEKLAYLPLAVCVSSTCFMPSDF 427
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3272637 3275593 + Lag0024462.1 Lac10g0417 582948
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g0417 427 FunFam E2F transcription factor 8 18 90 - -
Lac10g0417 427 Pfam E2F/DP family winged-helix DNA-binding domain 24 88 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Lac10g0417 427 Pfam E2F/DP family winged-helix DNA-binding domain 155 234 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Lac10g0417 427 MobiDBLite consensus disorder prediction 131 148 - -
Lac10g0417 427 PANTHER TRANSCRIPTION FACTOR E2F 9 360 IPR015633 GO:0000978(InterPro)|GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)|GO:0006357(InterPro)|GO:0090575(PANTHER)
Lac10g0417 427 FunFam E2F transcription factor-like E2FE 149 236 - -
Lac10g0417 427 SMART E2F_TDP_2 154 234 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Lac10g0417 427 SMART E2F_TDP_2 23 88 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Lac10g0417 427 SUPERFAMILY Winged helix DNA-binding domain 156 235 IPR036390 -
Lac10g0417 427 MobiDBLite consensus disorder prediction 115 151 - -
Lac10g0417 427 SUPERFAMILY Winged helix DNA-binding domain 22 86 IPR036390 -
Lac10g0417 427 Gene3D - 18 91 IPR036388 -
Lac10g0417 427 Gene3D - 149 236 IPR036388 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0417 Lac-Chr10:3272637 Lac1g2307 Lac-Chr1:44479315 2.20E-09 dispersed
Lac10g0417 Lac-Chr10:3272637 Lac3g0665 Lac-Chr3:5177653 6.10E-108 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22728 PF02319 E2F_TDP 2.70E-20 CL0123 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g0417 K09391 - csv:101219210 682.174