Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g0421 ATGGTTGGCCATGGCAATCACAGGTTGAAATTCTCCATCTTCCACCACCGATCTTCATCAGATTCCAAACCAGAACGCCCAAAAGAGTATCCCGAAGAGTACCTCTGCGGAATTTCCAAGTCGTTAATGGCGGACCCAGTTGTCGTCTCCTCCGGCCAGACCTTCGAGCGCCTCTGCGTTCAAGTTTGTCAAGATTTGGGGTTTTCGCCCAAGGTTGAAGAAGAAGACGGGTCCAGGGCGGATTTCTCCTCTGTTATTACCAACAGGAACATGAAATTCACCATTCTCAAATGGTGCGATAACAATGGAATCGAACACCCGCAAGCTCCCGATTACAGGTCCATTGAGTTGATCGTTCGTCAGTTGATGGAGAAGGAGAGGCAAGAGAATCGATTCCTGGCTTCTGATAGCGAGTTGTTAAGGGGCGTCGCCGATAAGCCACCGGGAGTTGCGGTTCACGCGACGACGGAGGTCGGGCTGCGAGTCAACCGGTTTCAACTCAACTCGCCGCCGGAGATGGAGGAGGTCGTACGGGAAAGCACTCTTTTGCCCTTCAAAACGCAGCCCTCTTGTTATGCGGCTTCCTCTTCACATGGAAGCTTCGACGGAGAGCTCAATCAAAGAGGAGATTCATATTCCCCGAATTCAGAAGAGGAATCTCAAATCATCTCGAAATTCAGAAGCGTTGAGGAATTCGAGCAACAAGAAGGAGTGATTTCCCTAAGAAAATTAACCAAATCAAACGAATCGATTAGGGTTTCGTTATGCACGAAGGAATTACTCGCCGCCCTACTCCCTCTGGTTTCATCCCGATCTACAAGCATCCAAATCAACGCCGTAGCTTCCGTCGTGAATCTCTCCCTGGAGAAATCGAACAAATTGAAGATCGTACGAGCCGGATTCGTTTCGCCATTGATCGACGTGTTAGACGGCGGATCCGCCGAATCGCAAGAACACGCCGCCGGTGCTCTGTTCAGTTTATCCTTAGACGACGAGAACAAAATGGCGATTGGAATCCTCGGCGCGTTGCCGGTGCTGATGAACACGCTCCGATCGGACAGCGAGAGGACGAGGAACGACGCGGCGCTTTGTTTATACCATTTGACTCTAAACCCTAGCAACCGAGTGAAGCTCGTGAAACTCGGCGCCGTTCCAATCCTGCTGTCGTTGACGAGAATGGAAGGCTCGGCGAGTCGAATACTGTTGATTCTGTGCAACATCGCCGTCTGCGTGGACGGGAGATCGGCGATGCTGGATGCGAATGCGGTGGGTTGTTTGGTGGAGATACTGAAGGAGAAGGAGATGGATTCCGAGTCGACTCGGGAGAATTGTGTGGTGGCGCTTCACGCACTGAGTCAGGGCGGATTCCGATTCAGAGGACTGGCGAAGGAGGCCGGAGCGGTGGAGGTTCTGAGAGAGGTTGAAGAAAGGGGAAGCGAGAGGGCGAGGGAGAAGGCGAAGAGGATTTTGCAGATGATGAGAACCGGCGGGAGCGGTTCGGTCGAGATGGAAGGGATCGGCCGACATGGGCTCGATACTGGCGGAGTCAGCTGGACCGGCCGAGTTGGTACTGGCGTGAACCGTTGGACTCGTTGGTTGGAAGGACAAGTGGTTGTAAGGTTTGGCGGATACGCAAGGGGGTTCAGAAATTCTGCACTCTCACAAAGACAAGAGTTTAGAGTTTCAAAGCTCTCAAGCAGAACCAGAGAATTCAGAGAGACTCCACCAAGTCTGAAGACCGAAGACTCTCTGCAATCCATAAGTCCAAGTGTTGAACACTTTTTGAAGACCCAACACTCTTCAAGACTTCAACACTTCTTGAAGACCCAACACTCTTCAAGACTTCAACACTCCTTGAAGATCAAAGACTCTTCAAGACATCAACACTTCTTGAAGATTGAAGACTCCTTCAAGACTGGAAGACTTCAAGCTCCAAGAATCCATTGA 1947 51.16 MVGHGNHRLKFSIFHHRSSSDSKPERPKEYPEEYLCGISKSLMADPVVVSSGQTFERLCVQVCQDLGFSPKVEEEDGSRADFSSVITNRNMKFTILKWCDNNGIEHPQAPDYRSIELIVRQLMEKERQENRFLASDSELLRGVADKPPGVAVHATTEVGLRVNRFQLNSPPEMEEVVRESTLLPFKTQPSCYAASSSHGSFDGELNQRGDSYSPNSEEESQIISKFRSVEEFEQQEGVISLRKLTKSNESIRVSLCTKELLAALLPLVSSRSTSIQINAVASVVNLSLEKSNKLKIVRAGFVSPLIDVLDGGSAESQEHAAGALFSLSLDDENKMAIGILGALPVLMNTLRSDSERTRNDAALCLYHLTLNPSNRVKLVKLGAVPILLSLTRMEGSASRILLILCNIAVCVDGRSAMLDANAVGCLVEILKEKEMDSESTRENCVVALHALSQGGFRFRGLAKEAGAVEVLREVEERGSERAREKAKRILQMMRTGGSGSVEMEGIGRHGLDTGGVSWTGRVGTGVNRWTRWLEGQVVVRFGGYARGFRNSALSQRQEFRVSKLSSRTREFRETPPSLKTEDSLQSISPSVEHFLKTQHSSRLQHFLKTQHSSRLQHSLKIKDSSRHQHFLKIEDSFKTGRLQAPRIH 648
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3312646 3315873 + Lag0024466.1 Lac10g0421 582952
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g0421 648 SMART arm_5 289 329 IPR000225 GO:0005515(InterPro)
Lac10g0421 648 SMART arm_5 410 453 IPR000225 GO:0005515(InterPro)
Lac10g0421 648 SMART arm_5 371 409 IPR000225 GO:0005515(InterPro)
Lac10g0421 648 SMART arm_5 330 370 IPR000225 GO:0005515(InterPro)
Lac10g0421 648 SUPERFAMILY RING/U-box 16 108 - -
Lac10g0421 648 Pfam Armadillo/beta-catenin-like repeat 330 369 IPR000225 GO:0005515(InterPro)
Lac10g0421 648 Pfam Armadillo/beta-catenin-like repeat 292 328 IPR000225 GO:0005515(InterPro)
Lac10g0421 648 Pfam U-box domain 31 102 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Lac10g0421 648 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 12 109 IPR013083 -
Lac10g0421 648 ProSiteProfiles U-box domain profile. 29 105 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Lac10g0421 648 Gene3D - 216 494 IPR011989 -
Lac10g0421 648 SMART Ubox_2 33 98 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Lac10g0421 648 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 300 337 IPR000225 GO:0005515(InterPro)
Lac10g0421 648 SUPERFAMILY ARM repeat 221 493 IPR016024 -
Lac10g0421 648 MobiDBLite consensus disorder prediction 194 217 - -
Lac10g0421 648 PANTHER U BOX DOMAIN-CONTAINING 18 495 - -
Lac10g0421 648 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 341 383 IPR000225 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0421 Lac-Chr10:3312646 Lac8g0474 Lac-Chr8:6171796 2.00E-25 dispersed
Lac3g2470 Lac-Chr3:36225284 Lac10g0421 Lac-Chr10:3312646 1.70E-50 transposed
Lac10g0421 Lac-Chr10:3312646 Lac3g0670 Lac-Chr3:5215747 5.60E-105 wgd
Lac10g0421 Lac-Chr10:3312646 Lac8g2617 Lac-Chr8:43757941 1.30E-80 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g0421 - - - 0.0