Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g0423 ATGGCTTTCCCTTTACTTTGCCTCTTTTTTCTCTCCATAATCCCCTTCTCCTCTGTCGAGTCCAAACTCACCGTCGGTTATTACCAAAAGACATGTCCCGACTTCGAGAAGATCGTTCGCGAGACTGTCACCAATAAGCAAATCACCAGCCCCGTCACCGCCGCTGGAACCCTTCGCCTCTTCTTCCACGACTGTATGGTTGATGGTTGCGACGCCTCCATCCTCATTTCCTCCAATTCCTTCAACCAAGCTGAGCGTGAGTCCGACATCAACCATTCCCTCTCCGGCGATGCCTTTGATGTTGTTATTCATGCCAAGACCAACCTCGAACTCATATGCCCTGGCATTGTGTCTTGTTCAGACATTTTAGCACAGGCGACTCGAGACCTAGTGGTGATGGTGGGAGGGCCATTCTATAACGTTCGATTGGGACGAAAAGATGGATTGATTTCAAAAGTAGAAAATGTGGAAGGGAACCTCCCAAGAGTGAACTTCACAATCGACACACTAATAAAATACTTCAACGACAGAGGGTTTACGATCCAAGAAATGGTTGCACTGTCGGGCGGCCACACCATCGGTTTCTCCCACTGTAAAGAGTTCACCGACCGCCTCTTCAACTTCAGTGCTTCCACACCCACTGATCCGGACATTTATCCCAAATTTGCCGACAAACTCAAGGCCATGTGCGCCAATCACTTGAGCGACACTACCATGTCTGCATTCAACGACGTAATGACACCTGGAAAATTCGACAACATGTACTTCCAAAATCTCGGACGTGGCCTTGGCCTTTTGGCCACTGACAATTTCCTCGTTAAGGATCCCAGGACCAAGCCGTTTGTCGATATGTACGCCGTTAACCAGACCGCGTTTTTTAACGACTTTGCTCACGCTATGGAGAAGGTCAGCGTTTTCGGCGTTAAGACGGGAAGGAAAGGGGAGGTTCGACGAAGGTGTGACCTTTTCAATTCCATTAAGACATGA 987 48.73 MAFPLLCLFFLSIIPFSSVESKLTVGYYQKTCPDFEKIVRETVTNKQITSPVTAAGTLRLFFHDCMVDGCDASILISSNSFNQAERESDINHSLSGDAFDVVIHAKTNLELICPGIVSCSDILAQATRDLVVMVGGPFYNVRLGRKDGLISKVENVEGNLPRVNFTIDTLIKYFNDRGFTIQEMVALSGGHTIGFSHCKEFTDRLFNFSASTPTDPDIYPKFADKLKAMCANHLSDTTMSAFNDVMTPGKFDNMYFQNLGRGLGLLATDNFLVKDPRTKPFVDMYAVNQTAFFNDFAHAMEKVSVFGVKTGRKGEVRRRCDLFNSIKT 328
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3320953 3322026 - Lag0024468.1 Lac10g0423 582954
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g0423 328 Pfam Peroxidase 39 287 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac10g0423 328 PRINTS Plant peroxidase signature 116 126 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac10g0423 328 PRINTS Plant peroxidase signature 32 51 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac10g0423 328 PRINTS Plant peroxidase signature 258 275 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac10g0423 328 PRINTS Plant peroxidase signature 298 311 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac10g0423 328 PRINTS Plant peroxidase signature 56 76 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac10g0423 328 PRINTS Plant peroxidase signature 182 194 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac10g0423 328 PRINTS Plant peroxidase signature 97 110 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac10g0423 328 PRINTS Plant peroxidase signature 135 150 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac10g0423 328 PRINTS Plant peroxidase signature 242 257 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac10g0423 328 Gene3D Peroxidase, domain 2 161 303 - -
Lac10g0423 328 Gene3D - 26 324 - -
Lac10g0423 328 PRINTS Haem peroxidase superfamily signature 54 68 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac10g0423 328 PRINTS Haem peroxidase superfamily signature 244 259 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac10g0423 328 PRINTS Haem peroxidase superfamily signature 135 147 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac10g0423 328 PRINTS Haem peroxidase superfamily signature 117 134 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac10g0423 328 PRINTS Haem peroxidase superfamily signature 183 198 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac10g0423 328 PANTHER - 8 324 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac10g0423 328 FunFam Peroxidase 26 170 - -
Lac10g0423 328 SUPERFAMILY Heme-dependent peroxidases 23 324 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac10g0423 328 FunFam Peroxidase 161 303 - -
Lac10g0423 328 ProSitePatterns Peroxidases active site signature. 54 65 IPR019794 GO:0004601(InterPro)
Lac10g0423 328 ProSiteProfiles Plant heme peroxidase family profile. 22 324 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac10g0423 328 CDD secretory_peroxidase 22 323 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Lac10g0423 328 ProSitePatterns Peroxidases proximal heme-ligand signature. 183 193 IPR019793 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0423 Lac-Chr10:3320953 Lac8g0409 Lac-Chr8:5201816 6.40E-105 dispersed
Lac10g0423 Lac-Chr10:3320953 Lac3g0672 Lac-Chr3:5237884 1.20E-124 wgd
Lac10g0423 Lac-Chr10:3320953 Lac8g2616 Lac-Chr8:43756430 2.20E-105 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g0423 K00430 - csv:101220163 560.836