Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g0440 ATGGCTATTCGAGGAGTCGATTTCAAGTGGTACGATGGGTTCTTCTTGTCGATGCTTGCTACTAGCATAATAATTGTGACCATCAACTGGAGGCGGTATAATACGTGTACATATCCGTTGCACATATGGATCGTGGTTGATTATACCTGTGTGTTTGCTTTTCGCCTTTTGCTGTTCATAGACAATGCACTTTCAGCTGGAATGGGATTGGATTTTGGATGGCAGCAGCGATATGCTCGGTTTTGCGGAAGAGTGGTGGTTCTTTCTATTCTCTCTATATTGCTCTACCCATTTTTATGTGCATGGACTGTAGTTGGTACCCTGTGGTTTAGAGGTGCTAAAGACTGTTTGCCTGAAGAAGGACAGAAATGGGGTTTCCTCATTTGGTTGCTTTTCAGCTACTGTGCCCTCCTTTGCATTGCCTGCATGTCAGTGGGAAAGTGGTTAGCGCGTCGACAAGCACACTTGTTACGTGCCCAACAAGGCATACCTGTATCAGAATATGGGGTACTGGTTGATATGATTAGGGTTCCTGATTGGGCATTTGAAGCTGCAGGACTGGAAACGCGAGGCATTGGCCAAGATGCTACCGGGTACCATCCCGGGCTTTTCTTAACCTCGGCTCAGAGGGAAGCTGTGGAAGCTCTCATTCAGGAACTTCCAAAGTTCAGGCTGAAGGCGGTCCCAACTGATTGCAGCGAATGCCCGATTTGCCTCGAAGAGTTCCATGTAGGGAATGAGGTTCGTGGTATGCCGTGTGCTCACAACTTCCACGTCGAATGTATCGACGAGTGGCTTCGTCTGAATGTCAAATGTCCTCGATGCCGCTCCTCGGTCTTCCCAAACCTCGACCTCAGTGCTCTTTCTAGCCTGCGTTCGGACACAGAACAAACATCTGCCAATGGTTTCCTAACAAACCAACCTTCAAGTCTGTTGAGATCCAGTCCAAGCCCGGTCGCTCGTACAGTAAACACGACAGCCCTCGATACCGACACTGCCTTCGATGCAATGGAGAACGGAAGCTCACCCGTGCCATCTGCTTCTCGACATTGA 1053 48.91 MAIRGVDFKWYDGFFLSMLATSIIIVTINWRRYNTCTYPLHIWIVVDYTCVFAFRLLLFIDNALSAGMGLDFGWQQRYARFCGRVVVLSILSILLYPFLCAWTVVGTLWFRGAKDCLPEEGQKWGFLIWLLFSYCALLCIACMSVGKWLARRQAHLLRAQQGIPVSEYGVLVDMIRVPDWAFEAAGLETRGIGQDATGYHPGLFLTSAQREAVEALIQELPKFRLKAVPTDCSECPICLEEFHVGNEVRGMPCAHNFHVECIDEWLRLNVKCPRCRSSVFPNLDLSALSSLRSDTEQTSANGFLTNQPSSLLRSSPSPVARTVNTTALDTDTAFDAMENGSSPVPSASRH 350
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3452271 3455200 + Lag0024485.1 Lac10g0440 582971
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g0440 350 SMART ring_2 235 275 IPR001841 -
Lac10g0440 350 MobiDBLite consensus disorder prediction 299 318 - -
Lac10g0440 350 ProSiteProfiles Zinc finger RING-type profile. 235 276 IPR001841 -
Lac10g0440 350 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3 1 346 IPR044793 GO:0004842(InterPro)|GO:0010182(InterPro)
Lac10g0440 350 FunFam E3 ubiquitin-protein ligase SIS3 203 281 - -
Lac10g0440 350 SUPERFAMILY RING/U-box 217 284 - -
Lac10g0440 350 Pfam Ring finger domain 234 276 IPR001841 -
Lac10g0440 350 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 204 281 IPR013083 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0440 Lac-Chr10:3452271 Lac7g0140 Lac-Chr7:1107973 1.70E-10 dispersed
Lac10g0440 Lac-Chr10:3452271 Lac3g0699 Lac-Chr3:5436827 3.10E-158 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g0440 K16284 - csv:101222360 654.055