Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac10g0442 | ATGAGGAATTTGAACTGGTTCAAGCCAATTTCGATCAATGGGAAGCCTGGGAGGAGGCTTTCTCTTGGAGAGTACGAGCGGGCTGTGTCGTGGTCTAAGTATTTGGTGTCGTCAGGGGCGGAGATAAAGGGAGAAGGTGAAGAAGAATGGAGTGCAGACATGTCCCAGTTGTTCATTGGCTTCAAATTTGCTACTGGAAGGCACAGCAGGATTTACAGAGGCGTGTATAAGCAGAGGGATGTTGCAATTAAGCTGATAAGCCAGCCTGAGGAGGATGAAAACTTGGCTAACTTTCTTGAGAATCAGTTCATTTCAGAGGTGGCATTGCTGTTTCGACTGAGACATCCCAATATCATCACTTTCATTGCAGCTTGCAAGAAACCTCCAGTGTTTTGTATCATCACGGAGTACATGGCAGGGGGTTCATTAAGAAAATATCTCCATCAGCAGGAGCCACATTCCGTTCCGCTGAACTTAGTTCTGAAACTAGCCCTCGATATCTCACGCGGGATGCAGTACCTTCACTCTCAGGGAATACTTCACAGGGATCTCAAATCAGAAAATCTCTTACTTGGTGAAGATATGTGCGTTAAGGTAGCAGATTTTGGTATCTCGTGCATAGAATCTCAGTGCGGAAGCGCGAAGGGATTCACCGGAACTTATCGCTGGATGGCACCTGAAATGATCAAAGAAAAACATCACACTAAGAAAGTTGATGTTTATAGCTTTGGCATTGTCTTGTGGGAGCTCTTGACTGCATTGACACCATTTGATAACATGACTCCTGAACAAGCAGCCTTTGCAGTCTGCCAGAAGAATGCAAGGCCTCCTCTACCTTCGGCGTGCCCAGTGGCATTTCGTCATCTGATCAAGAGGTGCTGGTCGAAAAATCCCGACAAGCGACCGCATTTCGACGAGATCGTTTCAATTTTGGAAACATACATGGAGTCTTACAATGAAGATCCAGAATTTTTCTGTCACTACGTGCCCTCATCTAGATATACTGCTTTTCAATGCTTACCAAAATGTATTACTGAACAATTGTCTGCTTCCTTGAAGCCTAGGAATTCATCATCTTGA | 1080 | 45.0 | MRNLNWFKPISINGKPGRRLSLGEYERAVSWSKYLVSSGAEIKGEGEEEWSADMSQLFIGFKFATGRHSRIYRGVYKQRDVAIKLISQPEEDENLANFLENQFISEVALLFRLRHPNIITFIAACKKPPVFCIITEYMAGGSLRKYLHQQEPHSVPLNLVLKLALDISRGMQYLHSQGILHRDLKSENLLLGEDMCVKVADFGISCIESQCGSAKGFTGTYRWMAPEMIKEKHHTKKVDVYSFGIVLWELLTALTPFDNMTPEQAAFAVCQKNARPPLPSACPVAFRHLIKRCWSKNPDKRPHFDEIVSILETYMESYNEDPEFFCHYVPSSRYTAFQCLPKCITEQLSASLKPRNSSS | 359 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 3462646 | 3464950 | + | Lag0024487.1 | Lac10g0442 | 582973 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac10g0442 | 359 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 179 | 191 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Lac10g0442 | 359 | PRINTS | Tyrosine kinase catalytic domain signature | 173 | 191 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Lac10g0442 | 359 | PRINTS | Tyrosine kinase catalytic domain signature | 282 | 304 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Lac10g0442 | 359 | PRINTS | Tyrosine kinase catalytic domain signature | 135 | 148 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Lac10g0442 | 359 | PRINTS | Tyrosine kinase catalytic domain signature | 238 | 260 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Lac10g0442 | 359 | PRINTS | Tyrosine kinase catalytic domain signature | 219 | 229 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Lac10g0442 | 359 | Gene3D | Phosphorylase Kinase; domain 1 | 47 | 139 | - | - | |
Lac10g0442 | 359 | ProSiteProfiles | Protein kinase domain profile. | 57 | 315 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lac10g0442 | 359 | CDD | STKc_MAP3K-like | 66 | 311 | - | - | |
Lac10g0442 | 359 | Pfam | Protein tyrosine and serine/threonine kinase | 63 | 311 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Lac10g0442 | 359 | SMART | serkin_6 | 57 | 315 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lac10g0442 | 359 | FunFam | Serine/threonine-protein kinase isoform 1 | 47 | 139 | - | - | |
Lac10g0442 | 359 | Gene3D | Transferase(Phosphotransferase) domain 1 | 140 | 347 | - | - | |
Lac10g0442 | 359 | SUPERFAMILY | Protein kinase-like (PK-like) | 47 | 311 | IPR011009 | - | |
Lac10g0442 | 359 | PANTHER | SERINE-THREONINE PROTEIN KINASE | 55 | 315 | IPR050167 | GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac10g0442 | Lac-Chr10:3462646 | Lac1g3332 | Lac-Chr1:53046788 | 1.30E-95 | dispersed | |
Lac7g0183 | Lac-Chr7:1462043 | Lac10g0442 | Lac-Chr10:3462646 | 2.30E-24 | dispersed | |
Lac9g2245 | Lac-Chr9:41820390 | Lac10g0442 | Lac-Chr10:3462646 | 3.40E-32 | dispersed | |
Lac10g0442 | Lac-Chr10:3462646 | Lac1g3168 | Lac-Chr1:51859632 | 1.40E-110 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
85629 | PF07714 | PK_Tyr_Ser-Thr | 1.60E-65 | CL0016 | Lac | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac10g0442 | - | - | - | 0.0 |