Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g0442 ATGAGGAATTTGAACTGGTTCAAGCCAATTTCGATCAATGGGAAGCCTGGGAGGAGGCTTTCTCTTGGAGAGTACGAGCGGGCTGTGTCGTGGTCTAAGTATTTGGTGTCGTCAGGGGCGGAGATAAAGGGAGAAGGTGAAGAAGAATGGAGTGCAGACATGTCCCAGTTGTTCATTGGCTTCAAATTTGCTACTGGAAGGCACAGCAGGATTTACAGAGGCGTGTATAAGCAGAGGGATGTTGCAATTAAGCTGATAAGCCAGCCTGAGGAGGATGAAAACTTGGCTAACTTTCTTGAGAATCAGTTCATTTCAGAGGTGGCATTGCTGTTTCGACTGAGACATCCCAATATCATCACTTTCATTGCAGCTTGCAAGAAACCTCCAGTGTTTTGTATCATCACGGAGTACATGGCAGGGGGTTCATTAAGAAAATATCTCCATCAGCAGGAGCCACATTCCGTTCCGCTGAACTTAGTTCTGAAACTAGCCCTCGATATCTCACGCGGGATGCAGTACCTTCACTCTCAGGGAATACTTCACAGGGATCTCAAATCAGAAAATCTCTTACTTGGTGAAGATATGTGCGTTAAGGTAGCAGATTTTGGTATCTCGTGCATAGAATCTCAGTGCGGAAGCGCGAAGGGATTCACCGGAACTTATCGCTGGATGGCACCTGAAATGATCAAAGAAAAACATCACACTAAGAAAGTTGATGTTTATAGCTTTGGCATTGTCTTGTGGGAGCTCTTGACTGCATTGACACCATTTGATAACATGACTCCTGAACAAGCAGCCTTTGCAGTCTGCCAGAAGAATGCAAGGCCTCCTCTACCTTCGGCGTGCCCAGTGGCATTTCGTCATCTGATCAAGAGGTGCTGGTCGAAAAATCCCGACAAGCGACCGCATTTCGACGAGATCGTTTCAATTTTGGAAACATACATGGAGTCTTACAATGAAGATCCAGAATTTTTCTGTCACTACGTGCCCTCATCTAGATATACTGCTTTTCAATGCTTACCAAAATGTATTACTGAACAATTGTCTGCTTCCTTGAAGCCTAGGAATTCATCATCTTGA 1080 45.0 MRNLNWFKPISINGKPGRRLSLGEYERAVSWSKYLVSSGAEIKGEGEEEWSADMSQLFIGFKFATGRHSRIYRGVYKQRDVAIKLISQPEEDENLANFLENQFISEVALLFRLRHPNIITFIAACKKPPVFCIITEYMAGGSLRKYLHQQEPHSVPLNLVLKLALDISRGMQYLHSQGILHRDLKSENLLLGEDMCVKVADFGISCIESQCGSAKGFTGTYRWMAPEMIKEKHHTKKVDVYSFGIVLWELLTALTPFDNMTPEQAAFAVCQKNARPPLPSACPVAFRHLIKRCWSKNPDKRPHFDEIVSILETYMESYNEDPEFFCHYVPSSRYTAFQCLPKCITEQLSASLKPRNSSS 359
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3462646 3464950 + Lag0024487.1 Lac10g0442 582973
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g0442 359 ProSitePatterns Serine/Threonine protein kinases active-site signature. 179 191 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac10g0442 359 PRINTS Tyrosine kinase catalytic domain signature 173 191 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac10g0442 359 PRINTS Tyrosine kinase catalytic domain signature 282 304 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac10g0442 359 PRINTS Tyrosine kinase catalytic domain signature 135 148 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac10g0442 359 PRINTS Tyrosine kinase catalytic domain signature 238 260 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac10g0442 359 PRINTS Tyrosine kinase catalytic domain signature 219 229 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac10g0442 359 Gene3D Phosphorylase Kinase; domain 1 47 139 - -
Lac10g0442 359 ProSiteProfiles Protein kinase domain profile. 57 315 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac10g0442 359 CDD STKc_MAP3K-like 66 311 - -
Lac10g0442 359 Pfam Protein tyrosine and serine/threonine kinase 63 311 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac10g0442 359 SMART serkin_6 57 315 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac10g0442 359 FunFam Serine/threonine-protein kinase isoform 1 47 139 - -
Lac10g0442 359 Gene3D Transferase(Phosphotransferase) domain 1 140 347 - -
Lac10g0442 359 SUPERFAMILY Protein kinase-like (PK-like) 47 311 IPR011009 -
Lac10g0442 359 PANTHER SERINE-THREONINE PROTEIN KINASE 55 315 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0442 Lac-Chr10:3462646 Lac1g3332 Lac-Chr1:53046788 1.30E-95 dispersed
Lac7g0183 Lac-Chr7:1462043 Lac10g0442 Lac-Chr10:3462646 2.30E-24 dispersed
Lac9g2245 Lac-Chr9:41820390 Lac10g0442 Lac-Chr10:3462646 3.40E-32 dispersed
Lac10g0442 Lac-Chr10:3462646 Lac1g3168 Lac-Chr1:51859632 1.40E-110 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85629 PF07714 PK_Tyr_Ser-Thr 1.60E-65 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g0442 - - - 0.0