Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g0448 ATGGAAGACCCCAAAACCCCAGAAACCCTAAAAGCCCAAAGCCCTGCGAATGAGATGAGCGAGGATATTTCTGGGTTTTCTGGGTTGGCTGATTTGAGTGCTGGGTTAGCGGTGGAGATTCCGGTTGCTGACAATGGCGTGGCGGTTAGTGCTTGCAGTAACGAAGCTGAGATTGGCAATGTCGAATTGGGGAATGAGGAAGGTGAAAAGGGAATGGACTTCTCGGAGAGAGAAATTTTGGTTGCTGGTGTGATTGCGGTGGCTGATGCTGAAGGAGACGGCGGTAATGGTGGTGCGGCTGAGGATGACCAGAGCAAAGGCAACGCGGTGGAATTAGATGGTGTTTCTACAGCTAAGAACATGGAAGGTTCTGGAGATGGTATATCGCTAACTGTGGACTTCTCGAATATTCAGCCGGAAGAGCCAGAACTTTCCAAGTCAATAGGGATGGAAGAAATGTCGACGGAAGCTGGAGGTGAAAAGCAGGTTATTGAAAATGGTCAAGAGCACAACTTTACGGTTGGTGATGTAATATGGGTCAAGACCAAAAGTCAGACATGGTGGCCGGGAAAGATATATCCCTCGGATGCAGCAGAAAGTGACGAAAGTGGCCGGAGCGATAGTCTATTAGTTGGCTATTTTGGGAGCAGCCATATGACATGGTGCTCTCCATCTCAGTTGATACCCTTCGCTGAAAACTTTGAGCAGATGTCTGGGAAATACAAGTCTCGAAGTTTCCTTGGAGCTGTCGAGAAAGCTGTGGATGAGTTTGGTAAATGTGTGAAGTTGGAGATGATGTGTTCGTGTATTCCAGAAGGAAACCGCCCATTAGAAGGTGATGATGGATCAAAGGATGCAACTTCTCTGCCTAGGCGTAAGTCTGGTTTCCTTGCTAAATATTCTGTTGATCAGTATGAGCCCAAAACATTCCTAGTACGTGTTAAGGGTCTTGCACAGATTGTTTCTCTATGTGGAGCACTAGAGTTGAGTATCCTATACAATCAAATAGCAGCTTTTCAAAGCTCAATAGGGCACCGGCAGTTACCTTTGCATCAACTCTTGGAAACTGATGATGCTGAAGACAATGTGGTGGGCAGATCAGTGAGAAAAAGCAAAGTTCGTGTTACATTAGAAGATGATGAAGAACAGGTCGAAGGTGGCACACAGAGCTCACCATTAGAGACACTATCAATAGGATCAGATGTTAGGCGCAAAAAGTTGGAAGGAAAGAATGGAGATCCAAATAAGGTACTTGATGGAAGCATGGAAGGAGGGAAAAGGAGCTCCAGAAGGAAAGCAATTGCTAATGGAGGAATAGAATCAAGATCTGCAAAAAGAAAAGGAAGTGGGAAATTTGAAGATCTTGAATCTAGTAAAATGGATTCTTCAATCAAGGGAGAGGTGATCGATCCATTAGCAGATGAAAGCAAGGATTCTGTTGTAGGAGACTTTGATGATGGGAGCAAAGGGATGTCTGAAAAGAGATCTGAGACGAGAGAGCGGAAGAAGAGCAAGTATTTGTCTTTTCCATACATAAACTGGGGGCAGAAAGGTATGCCAGCTGAAGCAGAGGATATTAAGACTCCTAAAATTTCTGGCGAAGGTGAGAATGAAAATGCAGTTGAGGGCGAGAATGAAACCCCTTTGCTATCTAAATGCAGTGGCAAGTTCTGGAAGAAGTGGTACCGGAGTATCACCAGTGGGAGTGATGTCGCTGACAATCAAGAGTTGATGAGTGTATCACCAGCTGAGTTTCTCTCTGAGCTTCATTTTACTGCTGTGAATTGTCTTTATCCGAATGAAAATAACAACTTTGATGCGGTTGCTCAGTTCTTCTCCAGATTTAGAATTTTGATGTTTCACGATGAATCTGTCAATGCTGGTCAAAATGAGGCAATGGCTGCCGATTTATTTTTTATTGGGGGAAAGGTGTCAGAGGTTAAGCATCCTTCTTCTACTGCTAAATCTGCGATCAAGAAAAGAAAAAGTCAAGCAAGTTCTATTACAAAAATGGAAGAGATGAAATCCAAACTAATCTCTGACGATGTGGCTTTAACTGGAAAAGCTGAAATATGTCCTACAGGAGATCCACAGAAAAAAAATCCGCTGTCTTCCAATGCTAAGTCAAAAAAAGATAGAGAAAGCTTGGGGAGATTGAAGACTAAATCCCTATCTGCCTTGTCAGATGTGAACATTAGCATTTCTTCCAGTAGCCCACTCACGAAAGATTCCCCGGAGATTGTTGGACCCGTCTCACCCAATGGTTTACCAAAGCGAAGGAAGAGAAAGAACGATGGATTGCATCCCCAGAGTAAACCAACAGAAATACCAGATTTAAATGGAAGTGGTTCAGTACCTGGCTTGTTGGTGGAAGAGCAACAGGCTGCGAGCCAGGTTGCTTCCCAACAAAAGTCTGAGCCAAAGAAGAGAAGGAAACTTGGAGTTGCTAAGGAGCATTCAAAGGTGTCTACTGAATACATAGATGTGAATAACAACAATAAACCTGGTTCGTTTTTCATTGATCTACAGGTCACAGCTCCACAACCAGTTGGTGTGATTCCAGAGAAAAATAAAGTGGATTTTGCAGGAGCGCCTAACCAGTCGGTGAAAGATCAGACAATTGGCCAGGATCAGAGCAAGGCTGGGGTCAAAAAGCGAAAGAGGAAGGAGAAACCACCATTGGCGGATCCAAAGGTTATCTTATCTTCTGATATACCAGATTTAAATGGAATGGGTATTGAATCTAGTCAGGGGAAAGATTCTCAGTTGACTAACAACCTCCCGCAACAGACTAAACCTAAGAGGAGGAGGAGGAAAAAAGGTGAAGCTAGTTTGAACCACCCAAATCCTTCTGACAGCAGACCATATATTTATAATAAAGTTGAAACTGATGGTGAAGGTTTAGGATCTCTTCTTCTCTTGACTTTCTCTTCAGAAGCTCCCTTACCTCCCCGGGAGCAAGTTATTACTACGTTTAGCCAGTTTGGATCATTGAAGGAATCAGAGATACAGTTGAAAGATTCAACTGTTGAGATAGTTTTTCTCCGAAGTGCTGATGCCATGGAAGCAGTTCGGAGTTTAAAGAAGAACAACATTTTTGGCCCAAATCTTTTAAAATACCAGCTCTTTCATCTCTCAGCTCCCCCCAGAACGTCGGACTCAGACCGGGCATGCACAGCACTGGCCTATCCAGCTTCTGAGGGCACTCTGAACCCATCAAAGTCTGCTGAATTAGGGTCTCAAGCAGGTGAGGCACCACCTATAGAGTTTATAAGGAAGAATCTTCAAATGATGACATCAATGCTGGAGAAGTCAGGAGACAATCTTTCCCCAGACATGAGAGCTAAATTGGAGAGTGATATTGAAGGCCTCCTCAAGAAGGTGAGTTCCATGGCAGGTTCTTCCTCAACGTAG 3414 43.97 MEDPKTPETLKAQSPANEMSEDISGFSGLADLSAGLAVEIPVADNGVAVSACSNEAEIGNVELGNEEGEKGMDFSEREILVAGVIAVADAEGDGGNGGAAEDDQSKGNAVELDGVSTAKNMEGSGDGISLTVDFSNIQPEEPELSKSIGMEEMSTEAGGEKQVIENGQEHNFTVGDVIWVKTKSQTWWPGKIYPSDAAESDESGRSDSLLVGYFGSSHMTWCSPSQLIPFAENFEQMSGKYKSRSFLGAVEKAVDEFGKCVKLEMMCSCIPEGNRPLEGDDGSKDATSLPRRKSGFLAKYSVDQYEPKTFLVRVKGLAQIVSLCGALELSILYNQIAAFQSSIGHRQLPLHQLLETDDAEDNVVGRSVRKSKVRVTLEDDEEQVEGGTQSSPLETLSIGSDVRRKKLEGKNGDPNKVLDGSMEGGKRSSRRKAIANGGIESRSAKRKGSGKFEDLESSKMDSSIKGEVIDPLADESKDSVVGDFDDGSKGMSEKRSETRERKKSKYLSFPYINWGQKGMPAEAEDIKTPKISGEGENENAVEGENETPLLSKCSGKFWKKWYRSITSGSDVADNQELMSVSPAEFLSELHFTAVNCLYPNENNNFDAVAQFFSRFRILMFHDESVNAGQNEAMAADLFFIGGKVSEVKHPSSTAKSAIKKRKSQASSITKMEEMKSKLISDDVALTGKAEICPTGDPQKKNPLSSNAKSKKDRESLGRLKTKSLSALSDVNISISSSSPLTKDSPEIVGPVSPNGLPKRRKRKNDGLHPQSKPTEIPDLNGSGSVPGLLVEEQQAASQVASQQKSEPKKRRKLGVAKEHSKVSTEYIDVNNNNKPGSFFIDLQVTAPQPVGVIPEKNKVDFAGAPNQSVKDQTIGQDQSKAGVKKRKRKEKPPLADPKVILSSDIPDLNGMGIESSQGKDSQLTNNLPQQTKPKRRRRKKGEASLNHPNPSDSRPYIYNKVETDGEGLGSLLLLTFSSEAPLPPREQVITTFSQFGSLKESEIQLKDSTVEIVFLRSADAMEAVRSLKKNNIFGPNLLKYQLFHLSAPPRTSDSDRACTALAYPASEGTLNPSKSAELGSQAGEAPPIEFIRKNLQMMTSMLEKSGDNLSPDMRAKLESDIEGLLKKVSSMAGSSST 1137
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3506847 3510260 - Lag0024493.1 Lac10g0448 582979

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g0448 1137 PANTHER PWWP DOMAIN-CONTAINING PROTEIN 104 673 IPR052657 -
Lac10g0448 1137 SMART PWWP_4 172 231 IPR000313 -
Lac10g0448 1137 CDD PWWP 175 256 - -
Lac10g0448 1137 SUPERFAMILY Tudor/PWWP/MBT 169 272 - -
Lac10g0448 1137 MobiDBLite consensus disorder prediction 651 670 - -
Lac10g0448 1137 Pfam PWWP domain 175 256 IPR000313 -
Lac10g0448 1137 MobiDBLite consensus disorder prediction 705 719 - -
Lac10g0448 1137 MobiDBLite consensus disorder prediction 804 822 - -
Lac10g0448 1137 MobiDBLite consensus disorder prediction 914 930 - -
Lac10g0448 1137 MobiDBLite consensus disorder prediction 734 822 - -
Lac10g0448 1137 MobiDBLite consensus disorder prediction 399 413 - -
Lac10g0448 1137 MobiDBLite consensus disorder prediction 1 22 - -
Lac10g0448 1137 MobiDBLite consensus disorder prediction 862 957 - -
Lac10g0448 1137 MobiDBLite consensus disorder prediction 689 720 - -
Lac10g0448 1137 Gene3D - 162 265 - -
Lac10g0448 1137 ProSiteProfiles PWWP domain profile. 174 233 IPR000313 -
Lac10g0448 1137 MobiDBLite consensus disorder prediction 444 501 - -
Lac10g0448 1137 MobiDBLite consensus disorder prediction 377 501 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g0448 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0448 Lac-Chr10:3506847 Lac6g2596 Lac-Chr6:43656702 2.10E-14 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g756 Blo04g00735 . Bda06g00598 . . Bpe13g00240 Bma06g00220 Bma12g01038 Cmo13g00917 . . . . . . Cpe20g00243 . . . . . . . . . . . . . . . . . . . . Csa01g00850 . Cme12g01695 . . Bda11g01653 . Bpe07g00839 Bpe15g00637 Bma03g00782 . . . . Cma13g00888 Cma18g00169 Car13g00728 Car18g00160 Cpe09g01026 . Bhi08g01607 Tan05g2010 . Lac10g0448 . . . Cla01g01299 Cam01g1430 Cec01g1465 . Clacu01g1365 Cmu01g1271 Cre01g1265 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004937 3 2 2 3 3 1 2 0 1 0 1 1 2 1 1 1 2 0 2 1 1 1 1 1 1 0 2 2 2 1 41