Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g0449 ATGACCATTAGTTTGAAGCTACCACGACTTTTCGTGGCGCGATTTGTGTGGAACAAAACCAAGCTGCTTGCTTGCCGGTTGTCGGATCTCCGGCACCGTTCACTGCTGATCGTCGAGCCGACGGTCCCTTCACCAAAAGCCCAATTCACCAATACTTCCATTTCATCTGACAGTGATTCAATTCCTCGAACCGTTCACTACAAATCGCCTATCCGGCCGTCGGCTGATCAGAATCCGAATTCCTACTACTTCCGCTCATTTTTTCCCGACCCAATCCGTTCTAGTCAAAGAATTGAAGAGGTCATCGATTGTCCGTTCTGTTTCAGAGCGTACGACGAGTGGAGGTCAAGTAAAGTCCAGTTGTGGGTTAGGCAGCTGGGTGGTGAAGGTTTGGTATTAATGGCTGGTCCTGGGGAAAACCTACATCCTGAAATTCGTGGTATAAAGGGAGATAATCAGCAAGCTGAGGATAAGAACCAGCATGTTGACAAAGAAGGTGGCCTGAGTGGCTGTGAGAGGGACATGGCTCCGGTTACCGGCAATTCCATTCACAGGTCTGGTTCTCGTCCGCAGCTAGACCTCAGTAAAGCTGCAATTCAGGGCAATTTGAGGAGAGAGACCCTACAATTCTGCTGCCTAATCAGTCTGATGATATATCTCACCTGGCTCTTGACATCGGCGGTATGTTCCTTGTGTATTCGTGTTATCTTGATTGGATCTCTCATCAAATTGGTGTACTTTTCAAGGCATGAAGATCAATCTGTTGATGATAAGAGAAAGAGGAGCATGAAGCAGAGACTGGGGTTTTCAAATGGTAATAGAAGAAGTTATCCAGTTCTTGGTGGGAGGCTTCATTTTGTGAAGTTTGAGACATGCAAGATTAACGAGTGTTTAGACTTCATTCATTCCAAGCAGCTTCATCGTGGTGCTTGCAAAGATTTACCTCATTGGCATTCAGATGGCTCAGCAAATGAAAATGCCATCATTAAGGCTACAGGTGGAGGGGCATACAAGTTTGCAGATCTTTTTAAAGAAAGACTTGGAGTTAGCCTTGATAAAGAAGATGAAATGGATTGTCTTGTGGCTGGAGCAAATTTTCTGCTTAAGGCAATACGTCATGAAGCTTTCACTCATATGGAGGGTAAAAAAGAGTTCGTGCAACTTGACCATAATGAATTGTTTCCTTATCTGCTTGTTAATATTGGTTCTGGTGTCAGCATGATCAAGGTTGACGGTGATGGGAAATTTCAGAGGGTTAGTGGGACAAATGTTGGAGGGGGTACGTACTGGGGCTTAGGAAGGCTGTTAACAAAATGTACTAGTTTTGATGAGTTGTTAGAGCTTAGTCAAAAGGGAGATAATAGCACAATTGACATGCTTGTTGGGGACATATATGGTGGCATGGATTACTCTAAGATCGGTCTTTCTGCGTCAACTATTGCATCTAGTTTTGGCAAGACCATCTCAGAGAACAAGGAGCTTAAGGACTACAGACCAGAAGATATCTCATTGTCTCTCTTGCGAATGATCTCATATAACATTGGACAGATATCATACTTGAATGCTCTACGGTTTGGACTTAAGAGAATCTTTTTTGGAGGATTCTTTATCAGGGGACATGCATATACCATGGATACAATTTCCTTTGCGGTTCAGTTCTGGTCAAAAGGAGAAGCACAGGCAATGTTTTTGCGTCATGAAGGGTTCTTAGGAGCCTTAGGTGCATTCATGAGCTATGAAAAGCATGGTCTCGATGACCTATTGGCCCATCAGTTAGTTGAAAGGTTTCCTATGGGTGCACCATATACGGGAGGGAGAGTTCATGGGCCTCCACTTGGTGATTTGAATGAGAAGATTTCTTGGATGGAGAAATTTTTGCAGAAGGGAACTGAAATAACTGCGCCTGTCCCTATGGCTCCCCCTGGAACAACTGGACTTGGAGGCTTTGAAGTCCCTTTATCCAAAGGAGGGACCCTGCGATCTGATGCAAGTGCCCTAAATGTTGGCGTTCTCCATCTAGTACCCACTTTGGAGGTGTTCCCTCTGTTGGCTGATCCAAAAACATATGAACCTAACACTATTGATCTCTCTGATCACTGTGAGTTGGAGTACTGGTTCACCGTGCTTTCAGAGCATTTAGCAGACCTTGTTGATAAGGCTGTTGCAAGTGAAGGTGGAACTGATGATGCCAAGAGAAGGGGAGATGCATTTGCTCGGGCATTTTCTGCCCACTTGAGGAGGTTGATGGAGGAACCTACAGCATATGGAAAATTGGGTTTGGCTAATCTTCTGGAATTGAGGGAAGAGTGCTTGAGGGAGTTCCAATTTTTTGATGCTTATAGAACCATAAAACAGAGGGAGAATGAGGCATCACTTGCTGTTTTACCTGACCTGCTGTTGGAACTTGATGGTATGAATGAGGAAGCAAGATTGCTGACCCTAATTGAAGGTGTTCTTGCTGCAAACATATTTGACTGGGGCTCTCGGGCCTGTGTTGATCTCTATCACAAGGGGACAATAATTGAGATTTACAGAATGAGTCGCAATAAGATGCAGAGGCCGTGGGGGGTCGATGATTTTGATGTCTTCAGAGAGAGAATGTTAGGATCTGGGGATAAGAAACCCCTTCCACATAAAAGAGCTCTTCTCTTTGTGGACAACTCAGGTGCTGATGTCGTTCTAGGGATGCTTCCCCTGGCAAGGGAACTCCTCCGACGCGGAACTGAAGTTGTTTTAGTTGCAAACTCTCTTCCTGCCATAAATGATATTACTGCAATGGAGCTTCCTGATATCGTAGCCGAGGCTGCCAAGCACTGCGACATACTACGTAGAGCTGCTGAAGCAGGCGGATTGATCGTGGATGCCATGATTAACTCTACGGATGGTTCCAAAGAGACTTCATCGTCTGTTCCCTTGATGGTTGTTGAAAATGGCTGTGGTAGTCCCTGTATAGATCTAAGACAGGTCAGCTCCGAGCTGGCTGCTGCAGCTAAAGATGCTGACTTGGTCATCTTGGAAGGAATGGGAAGAGCCCTGCACACCAACTTTAATGCCCAGTTCAAATGTGATGCTTTGAAGCTTGCCATGGTGAAAAATCAGAGGCTGGCAGAAAAATTGATCAAAGGAAACATATACGACTGTGTCTGCAGATATGAACCATCACACTGA 3168 45.08 MTISLKLPRLFVARFVWNKTKLLACRLSDLRHRSLLIVEPTVPSPKAQFTNTSISSDSDSIPRTVHYKSPIRPSADQNPNSYYFRSFFPDPIRSSQRIEEVIDCPFCFRAYDEWRSSKVQLWVRQLGGEGLVLMAGPGENLHPEIRGIKGDNQQAEDKNQHVDKEGGLSGCERDMAPVTGNSIHRSGSRPQLDLSKAAIQGNLRRETLQFCCLISLMIYLTWLLTSAVCSLCIRVILIGSLIKLVYFSRHEDQSVDDKRKRSMKQRLGFSNGNRRSYPVLGGRLHFVKFETCKINECLDFIHSKQLHRGACKDLPHWHSDGSANENAIIKATGGGAYKFADLFKERLGVSLDKEDEMDCLVAGANFLLKAIRHEAFTHMEGKKEFVQLDHNELFPYLLVNIGSGVSMIKVDGDGKFQRVSGTNVGGGTYWGLGRLLTKCTSFDELLELSQKGDNSTIDMLVGDIYGGMDYSKIGLSASTIASSFGKTISENKELKDYRPEDISLSLLRMISYNIGQISYLNALRFGLKRIFFGGFFIRGHAYTMDTISFAVQFWSKGEAQAMFLRHEGFLGALGAFMSYEKHGLDDLLAHQLVERFPMGAPYTGGRVHGPPLGDLNEKISWMEKFLQKGTEITAPVPMAPPGTTGLGGFEVPLSKGGTLRSDASALNVGVLHLVPTLEVFPLLADPKTYEPNTIDLSDHCELEYWFTVLSEHLADLVDKAVASEGGTDDAKRRGDAFARAFSAHLRRLMEEPTAYGKLGLANLLELREECLREFQFFDAYRTIKQRENEASLAVLPDLLLELDGMNEEARLLTLIEGVLAANIFDWGSRACVDLYHKGTIIEIYRMSRNKMQRPWGVDDFDVFRERMLGSGDKKPLPHKRALLFVDNSGADVVLGMLPLARELLRRGTEVVLVANSLPAINDITAMELPDIVAEAAKHCDILRRAAEAGGLIVDAMINSTDGSKETSSSVPLMVVENGCGSPCIDLRQVSSELAAAAKDADLVILEGMGRALHTNFNAQFKCDALKLAMVKNQRLAEKLIKGNIYDCVCRYEPSH 1055
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3513101 3534664 - Lag0024494.1 Lac10g0449 582980

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g0449 1055 Pfam Damage-control phosphatase ARMT1-like domain 729 1039 IPR002791 -
Lac10g0449 1055 NCBIfam type II pantothenate kinase 239 578 IPR004567 GO:0004594(InterPro)|GO:0005524(InterPro)|GO:0015937(InterPro)
Lac10g0449 1055 FunFam Pantothenate kinase 2 226 387 - -
Lac10g0449 1055 FunFam Pantothenate kinase 2 374 559 - -
Lac10g0449 1055 SUPERFAMILY Actin-like ATPase domain 239 374 IPR043129 -
Lac10g0449 1055 Gene3D - 237 387 - -
Lac10g0449 1055 PANTHER PANTOTHENATE KINASE 230 1051 IPR004567 GO:0004594(InterPro)|GO:0004594(PANTHER)|GO:0005524(InterPro)|GO:0005634(PANTHER)|GO:0005829(PANTHER)|GO:0015937(InterPro)|GO:0015937(PANTHER)
Lac10g0449 1055 SUPERFAMILY Actin-like ATPase domain 346 579 IPR043129 -
Lac10g0449 1055 Pfam Fumble 239 577 IPR004567 GO:0004594(InterPro)|GO:0005524(InterPro)|GO:0015937(InterPro)
Lac10g0449 1055 FunFam Pantothenate kinase 2 691 777 - -
Lac10g0449 1055 SUPERFAMILY AF1104-like 670 1053 IPR036075 -
Lac10g0449 1055 Gene3D - 459 568 - -
Lac10g0449 1055 Gene3D Uncharacterised protein PF01937, DUF89, domain 3 857 1053 - -
Lac10g0449 1055 Gene3D - 692 776 IPR035073 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g0449 K24265 - - csv:101203117 1628.99
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g0455 Lac-Chr12:5037411 Lac10g0449 Lac-Chr10:3513101 3.20E-57 transposed
Lac10g0449 Lac-Chr10:3513101 Lac13g0197 Lac-Chr13:1373579 2.00E-131 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g757 Blo04g00734 . . . . . . . . Cmo18g00128 . . . . . . . . . . . . . . . . . . . . . . Cone16ag0101 Cone13ag0142 . Lsi02g00371 Csa01g00852 Chy12g01267 Cme12g01694 . . . Bda14g00811 . Bpe15g00638 Bma03g00781 . . . . . Cma18g00170 . Car18g00161 Cpe09g01025 . Bhi08g01609 Tan05g2008 . Lac10g0449 Hepe07g2227 . . Cla01g01300 Cam01g1429 Cec01g1464 Cco01g1460 Clacu01g1366 Cmu01g1272 Cre01g1264 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005817 1 5 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 3 3 1 39