Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g0452 ATGGAAGAAACATTTTTTCCATTTCGTGGGATTAAGAATGATATAAGAGGAAGACTTCTATGCTACAAACAGGATTGGACTGGCGGACTTCGCTCTGGTATCAGGATCTTGGCCCCAACAACGTACATATTCTTTGCTTCAGCAATTCCAGTTATATCGTTCGGGGAGCAGCTAGAAAGGAATACATACGGGACTCTAACTGCCGTACAAACTCTAGCATCAACGGCAGTTTGTGGCATCATTCACTCAATCTTTGGGGGACAGCCTCTGCTCATCCTTGGTGTCGCTGAACCAACTGTTTTGATGTATACATTTATGTTTGACTTTGCCAAGGACCGAAAGGAACTGGGGCAGGAACTATTCTTAGCCTGGACGGGATGGGTATGTGTATGGACAGCCATTTTGCTTTTCTTGCTGGCTGTATTGGGTGCATGCTCCCTGATCAATAGGTTTACACGTCTTGCTGGAGAACTGTTTGGTCTGCTAATTGCTATGCTCTTTATGCAGCAGGCGATACGTGGTGTTGTGGAGGAATTCGGTGTACCCCAGAGGGAAAATCCTAATCAGGTGGGGCTTCAAGCTCCTTGGCGCTTTGGCAATGGAATGTTTGCATTAGTGCTGTCCTTCGGGCTTCTACTAACTGCACTCAAAAGCCGCAAGGCTAGATCATGGCGCTATGGAACTGGTTGCCTACGGGGCTTTATAGCGGATTATGGAGTTCCACTTATGGTGCTTGTATGGACAGCCTTATCATACATTCCAGTTAACAATGTCCCGCATGGGATTCCAAGGAGGCTTTTCAGTCCCAATCCATGGTCTCAGGGTGCTTACTCAAATTGGACAGTTATAAAGGAAATGTTGAGAGTGCCTCCATTGTATATAGTTGGAGCATTCATACCAGCGACTATGATAGCAGTTCTTTACTACTTTGATCACAGTGTTGCATCTCAACTTGCCCAACAGAAGGAGTTTAATTTGAAAAAACCAGCTTCATATCATTATGATCTTCTTCTCCTAGGTTTCCTTGTTATACTGTGCGGACTTATAGGCATTCCACCTGCCAATGGTGTAATTCCTCAATCTCCGATGCACACGAAAAGCTTAGCTACCCTAAAACATCAGCTTTTGCGGAACAAGCTGGTAGCAGCGGCACGTCAAAGTTTCCGGAAAAAATCAAACTTGAGTCAATTATACCGGAACATGCAAGAGGCATATAATGAGATGCAGACTCCTTTAATTTACCAAAATCCACCTGCTGCGGGGCTGAAGGAGTTGAAAGATTCCACGATCCAACTAGCTTCAAGAACTGGCTACATCGATGCACCTGTTGATGAAACTATTTTCGATGTGGATAAAGATGTTGATGATCTTCTGCCAGTGGAAGTTAAAGAACAACGTCTCAGCAATTTGCTTCAGGCAATAATGGTTGGTGGTTGTGTTGCTGCTATGCCTCTCCTAAAGAAGATCCCGACTTCGGTTCTTTGGGGCTACTTTGCTTTCATGGCAATCGAGAGCTTGCCCGGAAATCAATTCTGGGAAAGGATTTTACTGCTTTTCACTGCTCCGAACCGAAGATACAAGGTGCTGGAGGAATATCATGCAACCTTCCTAGAAACTGTCCCCTTCAAAACAATTGCTACCTTCACCTTGTTTCAGACAGTATATCTGCTGATGTGTTTTGGTTTAACCTGGATTCCAATTGCTGGTGTTCTTTTTCCGCTGTTGATCATGCTTCTTGTCCCCGTGCGGCAGTATCTGCTCCCCAGGTTCTTCAAAGGTGCTCATCTTCAGGACTTGGATGCTGCTGAATATGAGGAAGCCCCTGCAATTGCTTATAATCCGTCATTCGAAGATCGAATGGGAAGAACTCCCAACATTGACGACGGTGAAATACTCGACGAGATGATCACAAGAAGCCGTGGCGAGATTCGGCGTACGCAGAGTTCGAAAGTGACAAGCTCAACCCCAACTTCTCTAGAGGGCATCAAACCTACCTACAGCCCACAGATACCACAGAAACTGTACAGTCCACGGATCAATGAGCTGAGAAGAGAGAGAAGTTCTCTATCTCCTGGAAAAGGACTCGACTTTAAGCTAAGTCCAAGTCCTAGCTCAGAACCAGGGCCAGCACCAGCACCAGGACCATCCTTTAGAAATTAG 2160 45.51 MEETFFPFRGIKNDIRGRLLCYKQDWTGGLRSGIRILAPTTYIFFASAIPVISFGEQLERNTYGTLTAVQTLASTAVCGIIHSIFGGQPLLILGVAEPTVLMYTFMFDFAKDRKELGQELFLAWTGWVCVWTAILLFLLAVLGACSLINRFTRLAGELFGLLIAMLFMQQAIRGVVEEFGVPQRENPNQVGLQAPWRFGNGMFALVLSFGLLLTALKSRKARSWRYGTGCLRGFIADYGVPLMVLVWTALSYIPVNNVPHGIPRRLFSPNPWSQGAYSNWTVIKEMLRVPPLYIVGAFIPATMIAVLYYFDHSVASQLAQQKEFNLKKPASYHYDLLLLGFLVILCGLIGIPPANGVIPQSPMHTKSLATLKHQLLRNKLVAAARQSFRKKSNLSQLYRNMQEAYNEMQTPLIYQNPPAAGLKELKDSTIQLASRTGYIDAPVDETIFDVDKDVDDLLPVEVKEQRLSNLLQAIMVGGCVAAMPLLKKIPTSVLWGYFAFMAIESLPGNQFWERILLLFTAPNRRYKVLEEYHATFLETVPFKTIATFTLFQTVYLLMCFGLTWIPIAGVLFPLLIMLLVPVRQYLLPRFFKGAHLQDLDAAEYEEAPAIAYNPSFEDRMGRTPNIDDGEILDEMITRSRGEIRRTQSSKVTSSTPTSLEGIKPTYSPQIPQKLYSPRINELRRERSSLSPGKGLDFKLSPSPSSEPGPAPAPGPSFRN 719
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3562649 3567529 + Lag0024497.1 Lac10g0452 582983
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g0452 719 FunFam probable boron transporter 2 18 60 - -
Lac10g0452 719 PANTHER ANION EXCHANGE PROTEIN 6 638 IPR003020 GO:0005452(InterPro)|GO:0005886(PANTHER)|GO:0006820(InterPro)|GO:0016020(InterPro)|GO:0022857(PANTHER)|GO:0050801(PANTHER)|GO:0055085(PANTHER)
Lac10g0452 719 Pfam HCO3- transporter integral membrane domain 7 180 IPR011531 GO:0006820(InterPro)|GO:0016020(InterPro)
Lac10g0452 719 Pfam HCO3- transporter integral membrane domain 460 602 IPR011531 GO:0006820(InterPro)|GO:0016020(InterPro)
Lac10g0452 719 Pfam HCO3- transporter integral membrane domain 202 372 IPR011531 GO:0006820(InterPro)|GO:0016020(InterPro)
Lac10g0452 719 MobiDBLite consensus disorder prediction 642 719 - -
Lac10g0452 719 MobiDBLite consensus disorder prediction 646 674 - -
Lac10g0452 719 Gene3D Helical hairpin bin 18 60 - -
Lac10g0452 719 MobiDBLite consensus disorder prediction 704 719 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0452 Lac-Chr10:3562649 Lac11g0438 Lac-Chr11:4476716 0.00E+00 dispersed
Lac10g0452 Lac-Chr10:3562649 Lac6g0673 Lac-Chr6:5713728 6.70E-216 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g0452 K24194 - csv:101203606 1337.78