Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g0459 ATGGTCGATTTTGGTCAGAGGAATTCACCTGACCTTCACGTGCCACCAACGGTAAAATTTGTAGAAGAGGGGGAAGACGTGACCTGCAAGACAGTAAACCTGCACACCGGTGCGGTGCTCGCCACACCGGCTCCGATGCTTAAGTCAGCAAACAGAACAGAGGGGAGAGGAAAAGTAAGAGCAAGAGGAGAGAGTAGAGAATATAGAATGAGTTTTAGGGTTAGAGTTCGGGTCCCCTTCTTCAGTGGCGAAGAGGGGTATAAATACTTGCTCATCCTCCTAGGGTTTTTAGGTATTGGGAGGCGTTTTGGGACAAACCAGGCGGAACTGGGGCGATTCGGGGCATCAGGGACCGAAAAGAAGTCACTGGACTCGGCCCGCGCAACCGGGCCGACCATATGGAGCCAAAGCCTGGTTCAGACATCCATTGCCATGGCGTTTTCCTCTCGACTATCGCCGATTTCCTTGCCGCCTTCTTTCACTTCCCATTCTGAAGCAGGCCCTCTGTGTTTTACTACCTTCGATCGTTCTAGTTCTCAAGAAAGGCGAAGCTGTAGCAAGTTCCGGGGTTCAAAATTCCACTTTCCGCCCTCGATTGCGGCTCCAAGAACGGTAGCCGCCGGTGCTGTGTCACCCGTGGTTGTTGCAAATTCGAGCTCGCCAGTTACTTCATTCAGTAATTTGATTGAATCTCTGATTAATCGCGTTGATTTGTCGGAGGATGAAGCGGAGGCGTCTCTTCATTATCTTCTTAAGGATGCCAATGAGGCATCGATTAGTGCTTTTCTTGTGTTGCTGAGAGCCAAAGGAGAGACTTATGAAGAAATTGTGGGACTTGCGAGGGCGATGATCAAGCACAGTGTGAAGGTGGATGGCTTATTTGATGCCACTGACATTGTTGGAACCGGTGGTGATGGAGCAAACACAGTAAACATCTCAACTGGTGCTTCCATACTTGCTGCAGCATGTGGCACAAAGGTTGCGAAGCAAGGAAACCGTTCGAGTTCTTCTGCATGTGGAAGTGCCGATGTCTTAGAGGCACTAGGGGTAGTTATTGATTTGGGACCTGAGGGGGTTGTCAAGTGTGTTGATGAAGCTGGAATTGGCTTTATGATGGCTCCCAAATACCATCCTGCAATGAAGATTGTCAGTCCTGTTAGGAAGAAGCTAAAAGTAAAAACTGCATTTAACATACTGGGCCCTATGCTTAATCCGGCTAGAGTTCCTTTTGCTGTTGTTGGTGTATTTTCTGAGAACTTGGTCTCCAAAATGGCTAAATCACTGCAACTATTCGGCATGAAAAGAGCATTAGTAGTTCACTCTGAGGGTTTAGATGAGATGAGTCCCCTTGGACCAGGACTTATCCTAGACGTAACACCCGAAAGAATAGAAACGTTTGCATTTGATCCATTGGATTTTGGCATCCCTCGCTGCACCATAGATGACCTTCGAGGAGGAGACCCCAAGTATAACGCAGAGGTCTTGAAGCGCGTTTTATCCGGGGAAAAGGGGCATATTGCAGATGCACTTATCCTGAATGCTGCTGCCTCCCTTCTGGTTAGCTGCAAAGTGACCACCTTGGCCGAGGGAGTCGAGTTGGCTCGCGAAACTCAACAGTCTGGAAAAGCCATGAAGACCCTTGATTTGTGGATAGAACTCTCCAATAAACTAAGAGAAGTACATGTCTGA 1689 48.37 MVDFGQRNSPDLHVPPTVKFVEEGEDVTCKTVNLHTGAVLATPAPMLKSANRTEGRGKVRARGESREYRMSFRVRVRVPFFSGEEGYKYLLILLGFLGIGRRFGTNQAELGRFGASGTEKKSLDSARATGPTIWSQSLVQTSIAMAFSSRLSPISLPPSFTSHSEAGPLCFTTFDRSSSQERRSCSKFRGSKFHFPPSIAAPRTVAAGAVSPVVVANSSSPVTSFSNLIESLINRVDLSEDEAEASLHYLLKDANEASISAFLVLLRAKGETYEEIVGLARAMIKHSVKVDGLFDATDIVGTGGDGANTVNISTGASILAAACGTKVAKQGNRSSSSACGSADVLEALGVVIDLGPEGVVKCVDEAGIGFMMAPKYHPAMKIVSPVRKKLKVKTAFNILGPMLNPARVPFAVVGVFSENLVSKMAKSLQLFGMKRALVVHSEGLDEMSPLGPGLILDVTPERIETFAFDPLDFGIPRCTIDDLRGGDPKYNAEVLKRVLSGEKGHIADALILNAAASLLVSCKVTTLAEGVELARETQQSGKAMKTLDLWIELSNKLREVHV 562
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3612146 3618345 + Lag0024504.1 Lac10g0459 582990

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g0459 562 SUPERFAMILY Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 297 559 IPR035902 -
Lac10g0459 562 Gene3D Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 294 562 IPR035902 -
Lac10g0459 562 FunFam Anthranilate phosphoribosyltransferase 292 556 - -
Lac10g0459 562 PANTHER ANTHRANILATE PHOSPHORIBOSYLTRANSFERASE 217 555 IPR005940 GO:0000162(InterPro)|GO:0000162(PANTHER)|GO:0004048(InterPro)|GO:0005829(PANTHER)
Lac10g0459 562 Pfam Glycosyl transferase family, helical bundle domain 227 286 IPR017459 -
Lac10g0459 562 NCBIfam anthranilate phosphoribosyltransferase 229 552 IPR005940 GO:0000162(InterPro)|GO:0004048(InterPro)
Lac10g0459 562 Pfam Glycosyl transferase family, a/b domain 296 544 IPR000312 GO:0016757(InterPro)
Lac10g0459 562 SUPERFAMILY Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain 225 291 IPR036320 -
Lac10g0459 562 FunFam Anthranilate phosphoribosyltransferase, chloroplastic 211 291 - -
Lac10g0459 562 Hamap Anthranilate phosphoribosyltransferase [trpD]. 227 553 IPR005940 GO:0000162(InterPro)|GO:0004048(InterPro)
Lac10g0459 562 Gene3D Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C 215 291 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g0459 K00766 - - csv:101204330 676.396
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0459 Lac-Chr10:3612146 Lac13g0834 Lac-Chr13:6709047 8.20E-44 dispersed
Lac10g0459 Lac-Chr10:3612146 Lac13g1297 Lac-Chr13:11916951 7.20E-48 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g770 . . . . . . . . . . . . . . . Cpe20g00249 . . . . . . . . . . . . . . . Cone2ag0915 Cone16ag0093 . . Lsi02g00381 Csa01g00861 Chy12g01260 Cme12g01685 . . . . . . . . Sed08g2521 . . . . Car13g00720 . . . Bhi08g01624 Tan05g1995 Cmetu12g2030 Lac10g0459 Hepe07g2218 . . Cla01g01308 Cam01g1422 Cec01g1456 Cco01g1468 Clacu01g1373 Cmu01g1281 Cre01g1258 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009653 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 2 33