Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g0471 ATGTCAACTATGAGGGAAACTTCGAGATTAGCTGAGGCTTCCATCAATGGTATTGTCCGACGGATGGTTAATCTTCCCAGAAGCATATTAGGAGGATTTTCAAGAGTTATGGGCGGAGGAAGAAGAAACCAGACTCTGCCATCCATGTACCAATATCAGGTTCTGCAAGACACACCAAATGTGCCGGAAGAATGGTCTTTCTTAACAAGTTTTCAGTACCAGTATGGCTCAATGCACCCCTTTTTTTACGCCTGTCGGTTTGCCGAAGCCATGAAGATAGCAGAAGATGATCATAAGTTCTTATTCTTGTATCTGCACTCACCAGACCACCCATTCACGCCCTCTTTCTGTGAGGCGACACTGCGTTCAGAGCTAGTAGTGCAGTTTCTTGATGCTAACTTCATCTGTTGGGGGGCACTTGCGGATAGAGGAGATGGTCTACAGATGGCTACAACATTAGGAGCTACCAGTTTCCCTTTCTGTGCAGTAATTGCTCCAGCTCCAGGCGAAAGCATTACAGTCCTGCAACAGCTTGAAGGACCACTTTCTCCAGCTGAACTGGTGGAGATTCTACAGAGGACAATTGAGGAGCAGGGATCAGCTTTTGGTAGCTCCAGACTCAAGCGAGAAGAGAAGATAAGAGAGGATCGCAGGCTTAGAGAAGAGCAAGACAGAGCATATCATGCCGCTCTTCAAGAAGATAAGGAAAGGGAAAGACTTAAAAATCTACCTCCGGTGTTACCGAAGAAAGCAAATGATGTGAGGCTCAAGCAGAATTCTCCAAATATACAGCATGGTAGACTGAAAGAACCTACTTTTACTCGTGAAACTCAAAACAAGGATCCTACAAGTAAAGGAAAGGATTCTCAGCCTAGCACCCAGATACTAATAAGGTTTCCAAACGGTGAAAAGAGAGAGAAGAGCTTTTCAAGCATGGACAAGGTGAAATCAATTTACAGTTACATCAATTCGCTCAGCCTGCCTGGCACTGAAAACTATAGATTGATAGCAAGCTTCCCAAGAAGAGTATATGGTAAAGATGAGATGAATATGACTCTGAAAGATGCTGGCCTCCACCCAAGAGCAAGTCTGTTTCTGGAATGTCAGTGA 1110 44.59 MSTMRETSRLAEASINGIVRRMVNLPRSILGGFSRVMGGGRRNQTLPSMYQYQVLQDTPNVPEEWSFLTSFQYQYGSMHPFFYACRFAEAMKIAEDDHKFLFLYLHSPDHPFTPSFCEATLRSELVVQFLDANFICWGALADRGDGLQMATTLGATSFPFCAVIAPAPGESITVLQQLEGPLSPAELVEILQRTIEEQGSAFGSSRLKREEKIREDRRLREEQDRAYHAALQEDKERERLKNLPPVLPKKANDVRLKQNSPNIQHGRLKEPTFTRETQNKDPTSKGKDSQPSTQILIRFPNGEKREKSFSSMDKVKSIYSYINSLSLPGTENYRLIASFPRRVYGKDEMNMTLKDAGLHPRASLFLECQ 369
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3654151 3655544 - Lag0024516.1 Lac10g0471 583002

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g0471 369 ProSiteProfiles UBX domain profile. 288 366 IPR001012 GO:0005515(InterPro)
Lac10g0471 369 PANTHER FAS-ASSOCIATED PROTEIN 10 367 IPR050730 GO:0005783(PANTHER)|GO:0030433(PANTHER)|GO:0043130(PANTHER)
Lac10g0471 369 SUPERFAMILY Ubiquitin-like 234 367 IPR029071 -
Lac10g0471 369 SMART ubx_3 285 368 IPR001012 GO:0005515(InterPro)
Lac10g0471 369 CDD UAS 87 197 - -
Lac10g0471 369 MobiDBLite consensus disorder prediction 269 283 - -
Lac10g0471 369 Gene3D Glutaredoxin 60 201 - -
Lac10g0471 369 SUPERFAMILY Thioredoxin-like 59 200 IPR036249 -
Lac10g0471 369 Gene3D - 291 369 - -
Lac10g0471 369 SMART 45neu3 66 192 IPR006577 -
Lac10g0471 369 Pfam UBX domain 289 367 IPR001012 GO:0005515(InterPro)
Lac10g0471 369 MobiDBLite consensus disorder prediction 201 293 - -
Lac10g0471 369 CDD UBX 295 367 - -
Lac10g0471 369 MobiDBLite consensus disorder prediction 203 244 - -
Lac10g0471 369 Pfam Fas-associated factor 1 67 138 IPR049483 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g0471 K18726 - - csv:101205471 647.891
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0471 Lac-Chr10:3654151 Lac11g1941 Lac-Chr11:34905600 2.80E-53 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g788 Blo04g00728 . . . . . . . Cmo13g00906 . . . . . . Cpe20g00253 . . . . . . . . . . . . . . . Cone2ag0920 Cone16ag0087 . . Lsi02g00391 Csa01g00869 Chy12g01253 Cme12g01677 . . . . . Bpe15g00644 . . Sed02g1604 . . Cma13g00873 . Car13g00715 . . . Bhi08g01641 Tan05g1988 Cmetu09g0491 Lac10g0471 . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013011 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 0 1 1 1 0 1 1 1 28