Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g0496 ATGTCTCAGGATATGTCATTGGATCAAGACCTGGATGAATCTGATCCCGAATTCGTGGAGATTGATCCTACTGGTCGATATGGACGGGCAAATGTGGTATTTAGATATCGGGCTTTTGATGAGTTGGAAGGAATTGAAGTAGCTTGGAATCAGGTTAAGGTAACAGATCTATTGCGGAACTCTGAAGATTTGGAGCGACTCTATTCAGAAGTTCATTTGCTAAAAACATTGAAGCACAAGAACATAATCAAATTTTACAATTCATGGGTTGATACGAAAAATGAAAACATCAACTTCATTACCGAGATATTCACTTCAGGGACACTACGGCAATATAGAAAGAAACACAAGCATGTTGATGTGAGAGCACTGAAAAAATGGTCAAGGCAGATACTAGAGGGCCTTCTGTATCTTCATAGCCATGACCCTCCAGTCATACATAGAGATTTGAAATGTGACAATATCTTTGTCAATGGCAACCAAGGTGAGGTGAAAATTGGTGACCTAGGACTCGCGGCCATTCTTCAGCAAGCTCGTTCAGCTCACAGTGTCATCGGGACTCCAGAGTTTATGGCTCCAGAGCTGTATGAGGAGGAATATAATGAGCTTGTGGATATTTATGCCTTTGGCATGTGTTTGCTTGAGCTTGTGACTTTTGAATATCCATATATTGAATGTGCAAATGCTGCTCAAATATATAAGAAGGTCACATCAGGGATAAAGCCAGCTTCATTGGCAAAAGTTACCGATGGAGGGGTTAGAGCATTTATAGAAAAATGTATTGCAAATGTTTCCGATCGCTTGCCTGCAAAAGATCTTTTAAGGGATCCATTTCTCCGAGCAGATGATGATCATGAAAGTCTAGCTCGTCATTTACAACCCAAGATACATCATACAGAAAAAGAGCATACTGATATTGATAGAAGTGTAGAGGATACTTCTGCTGAAACTAGCAGAGACTACAGTATGCATGGTCAGAGAAAAGATGTTAACAAGATATTTCTCAAACTACGAATTGCAGACTCAATGGGTAATTTTCGCAATATCCATTTTCCGTTTGATATTGAAGCCGACACAGCAATTTCTGTTGCCAGTGAAATGGTTGAGGAGTTGGACCTTTCAGATCAAGATGTCTCCACGATTTCTGAAATGATTGAAACAGAAATTAGGTCTTATATTCCAGATTGGACATCAGTTGACTATTCTGCAGATAATGTAGATAATGCAAGAACAGATGTTGCGGTTTCAGATAGCTCTACGTCTGAAACAAGGAATGCTGCCTCTCCCTTGTCTATTGAATCTAACAACCTTGCATTAGAGGTAATGCCTTCAGGGCGCAAGTATTGGTCTGATTCTCCAAAGGGAATGGGTGGGTGCTCTCCTATTAAGCCGCCAGGTCCTTCAAATTTGTCTTTTATCTTGGATCATAATGTTGAATCTTCTAGCAGCGATTTGCATGGGGATAATCTAGATCATGATGCTATAATCAAGGGACTAGAAAGTGAGCTCTTGTCTGAGGATGCTGCTAATGATGGGCAGGATCTTCATGCTAGTTTTGGGACACATCCTCCAGAAGAGAACAGTGAAGTTTCAAAACATGATGGACCAGTTGAGGTTGAGATAATGACGGAAAAACTTGAAAATTTGTTGACACAACAACAAAAAGAATTAGATGAACTAAAGAAGAAACATAAATCAGCTATTTCAGAACTTCTGACTAAAGTTACACCTGAGTCCTACCAGAAGGTTATAGGAATGTGTAAGCTAAAGCATTCTGATTTTGATCTGGTTCCCTAA 1797 39.79 MSQDMSLDQDLDESDPEFVEIDPTGRYGRANVVFRYRAFDELEGIEVAWNQVKVTDLLRNSEDLERLYSEVHLLKTLKHKNIIKFYNSWVDTKNENINFITEIFTSGTLRQYRKKHKHVDVRALKKWSRQILEGLLYLHSHDPPVIHRDLKCDNIFVNGNQGEVKIGDLGLAAILQQARSAHSVIGTPEFMAPELYEEEYNELVDIYAFGMCLLELVTFEYPYIECANAAQIYKKVTSGIKPASLAKVTDGGVRAFIEKCIANVSDRLPAKDLLRDPFLRADDDHESLARHLQPKIHHTEKEHTDIDRSVEDTSAETSRDYSMHGQRKDVNKIFLKLRIADSMGNFRNIHFPFDIEADTAISVASEMVEELDLSDQDVSTISEMIETEIRSYIPDWTSVDYSADNVDNARTDVAVSDSSTSETRNAASPLSIESNNLALEVMPSGRKYWSDSPKGMGGCSPIKPPGPSNLSFILDHNVESSSSDLHGDNLDHDAIIKGLESELLSEDAANDGQDLHASFGTHPPEENSEVSKHDGPVEVEIMTEKLENLLTQQQKELDELKKKHKSAISELLTKVTPESYQKVIGMCKLKHSDFDLVP 598
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3798994 3802406 - Lag0024541.1 Lac10g0496 583027
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g0496 598 Coils Coil 539 570 - -
Lac10g0496 598 ProSitePatterns Serine/Threonine protein kinases active-site signature. 145 157 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac10g0496 598 Gene3D - 331 414 - -
Lac10g0496 598 MobiDBLite consensus disorder prediction 512 532 - -
Lac10g0496 598 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 13 568 IPR050588 GO:0004674(PANTHER)|GO:0005737(PANTHER)|GO:0006468(PANTHER)|GO:0035556(PANTHER)
Lac10g0496 598 Gene3D Transferase(Phosphotransferase) domain 1 104 286 - -
Lac10g0496 598 ProSiteProfiles Protein kinase domain profile. 16 279 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac10g0496 598 FunFam probable serine/threonine-protein kinase WNK9 104 284 - -
Lac10g0496 598 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 335 389 IPR024678 GO:0004674(InterPro)|GO:0005524(InterPro)
Lac10g0496 598 FunFam Probable serine/threonine-protein kinase WNK1 12 102 - -
Lac10g0496 598 Gene3D Phosphorylase Kinase; domain 1 12 102 - -
Lac10g0496 598 Pfam Protein kinase domain 36 279 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac10g0496 598 CDD STKc_WNK 26 279 - -
Lac10g0496 598 SUPERFAMILY Protein kinase-like (PK-like) 36 324 IPR011009 -
Lac10g0496 598 MobiDBLite consensus disorder prediction 290 322 - -
Lac10g0496 598 SMART serkin_6 18 279 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0496 Lac-Chr10:3798994 Lac12g2279 Lac-Chr12:39919600 2.90E-132 dispersed
Lac10g0496 Lac-Chr10:3798994 Lac2g0245 Lac-Chr2:1855606 7.70E-08 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85631 PF00069 Pkinase 7.90E-45 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g0496 K08867 - csv:101206177 991.104