Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g0513 ATGTTTGTAGGTGGAACCGACACAACAGCGACAGGTTTAGAATGGACAATGGCAGAGCTAATGAGAAACCCAACAGCCATGAAGAAAGTCCAAGAAGAGGTAAGAACAATAATTGGAAAAAAACAAAAGATTGAAACAGAAGACATTAAAAAAATGGAATATATGAATTGTGTGATAAAAGAATCTCTTCGTTTACATCCACCAATTCCTCTATTACTGCCACGACAAACATCGAGTAACGTCGTCAACCTCGAAGGCTACCAAATCCCACCAAAAACCAGCGTTTGGATCAACGTTTGGGCAATACAAAGAGACCCCAAAATCTGGGAAAGGCCAGATGAGTTCATCCCAGAGAGATTCATGGAAAAGAATAATTCAGTTGATTTCAAAGGTCAAGACTTTGAGTTCGTTCCATTTGGAAGTGGAAGAAGGAAGTGCATTGGAATGTCATTTGGGCTTGCTTCTTTTGAATGTGTATTGGCAAATCTTCTCTATTGGTTTGATTGGAAGCTGCCAGAAGAGTTGGATATGAGTGAACAACATGGGCTGTCTGTTTTCAAGAAAGTTCCACTCCACCTTATCCCAATTCTTCCACGTTGTGTGTAA 606 40.1 MFVGGTDTTATGLEWTMAELMRNPTAMKKVQEEVRTIIGKKQKIETEDIKKMEYMNCVIKESLRLHPPIPLLLPRQTSSNVVNLEGYQIPPKTSVWINVWAIQRDPKIWERPDEFIPERFMEKNNSVDFKGQDFEFVPFGSGRRKCIGMSFGLASFECVLANLLYWFDWKLPEELDMSEQHGLSVFKKVPLHLIPILPRCV 201
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3956740 3957345 - Lag0024558.1 Lac10g0513 583044
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g0513 201 PANTHER CYTOCHROME P450 71B11-RELATED 1 196 IPR050193 -
Lac10g0513 201 PRINTS P450 superfamily signature 137 146 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac10g0513 201 PRINTS P450 superfamily signature 4 21 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac10g0513 201 PRINTS P450 superfamily signature 146 157 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac10g0513 201 PRINTS P450 superfamily signature 57 68 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac10g0513 201 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 139 148 IPR017972 GO:0005506(InterPro)|GO:0016705(InterPro)
Lac10g0513 201 Coils Coil 27 47 - -
Lac10g0513 201 Pfam Cytochrome P450 1 177 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac10g0513 201 Gene3D Cytochrome P450 1 193 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac10g0513 201 FunFam Predicted protein 2 193 - -
Lac10g0513 201 SUPERFAMILY Cytochrome P450 1 195 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac10g0513 201 PRINTS E-class P450 group I signature 136 146 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac10g0513 201 PRINTS E-class P450 group I signature 146 169 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac10g0513 201 PRINTS E-class P450 group I signature 13 39 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac10g0513 201 PRINTS E-class P450 group I signature 98 122 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac10g0513 201 PRINTS E-class P450 group I signature 56 74 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0513 Lac-Chr10:3956740 Lac10g0502 Lac-Chr10:3853381 3.20E-67 dispersed
Lac10g0513 Lac-Chr10:3956740 Lac10g0517 Lac-Chr10:3973935 5.90E-45 proximal
Lac10g0512 Lac-Chr10:3936385 Lac10g0513 Lac-Chr10:3956740 5.90E-87 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g0513 K20617 - csv:101208836 330.102