Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g0517 ATGAACGAGCTTATAAGACATCCAAAGGCAATGAAAAGAGCACAAAACGAAATTCGAAGCATCGTTGGTGATAGAAAAGTCGTAACAGAGACTGATCTTTCAGAAATGCCTTATTTGAAAGCTGTGGTTAAAGAAGTTCTTCGATTGCATCCACCGGCGCCGATTTCGGTTGCGAGAGAGACCATGGAAGATGTCACGATCGAAGGCTACGACATTCCGGCCAAAACAAGAGCTTATTTGAATGTTTGGGCGATTGGGAGAGACCCAGAATCGTGGAAAGACCCTGAAAGCTTTGAGCCAGAGAGGTTTTTGAACAGTGAGGTTGATTACAGAGGGTTGGATTTTGAGTTCCTTCCGTTCGGAGCTGGAAGAAGGATCTGTCCTGGTATTACAATGGGGATAGCCACGATTGAACTCGCTTTGGCTCAGATTTTGCATAGCTTTGATTGGGAACTTCCGAGTGGGATTGAAGCTAAGGATTTGGATATGACTGAAGTTTTTGGTATCACAACGCATAGAATAGCTCACTTGGAAGTCGTGGCAAAACCTTACTTTGCCTCATCTATCTCGAATTAA 576 43.92 MNELIRHPKAMKRAQNEIRSIVGDRKVVTETDLSEMPYLKAVVKEVLRLHPPAPISVARETMEDVTIEGYDIPAKTRAYLNVWAIGRDPESWKDPESFEPERFLNSEVDYRGLDFEFLPFGAGRRICPGITMGIATIELALAQILHSFDWELPSGIEAKDLDMTEVFGITTHRIAHLEVVAKPYFASSISN 191
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3973935 3974510 + Lag0024562.1 Lac10g0517 583048
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g0517 191 PANTHER TRYPTAMINE 5-HYDROXYLASE 1 184 - -
Lac10g0517 191 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 120 129 IPR017972 GO:0005506(InterPro)|GO:0016705(InterPro)
Lac10g0517 191 Gene3D Cytochrome P450 1 186 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac10g0517 191 PRINTS P450 superfamily signature 118 127 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac10g0517 191 PRINTS P450 superfamily signature 41 52 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac10g0517 191 PRINTS P450 superfamily signature 6 19 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac10g0517 191 PRINTS E-class P450 group I signature 127 150 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac10g0517 191 PRINTS E-class P450 group I signature 81 105 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac10g0517 191 PRINTS E-class P450 group I signature 40 58 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac10g0517 191 PRINTS E-class P450 group I signature 117 127 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac10g0517 191 FunFam Predicted protein 1 179 - -
Lac10g0517 191 SUPERFAMILY Cytochrome P450 2 183 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac10g0517 191 Pfam Cytochrome P450 3 172 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0517 Lac-Chr10:3973935 Lac13g0123 Lac-Chr13:857567 1.30E-57 dispersed
Lac10g0513 Lac-Chr10:3956740 Lac10g0517 Lac-Chr10:3973935 5.90E-45 proximal
Lac10g0517 Lac-Chr10:3973935 Lac2g0262 Lac-Chr2:1986482 6.00E-39 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g0517 - - - 0.0