Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g0530 ATGGCGCCGCCCTCACTCCCTCTCTCTCTCCTCCTCTCCCTCTTCCTCCTCTCCTCCCTCTCCTCCGCCCTCTCCGCCGTCCAAAACCCCGAGCTCATCGTACAGGAAGTACACAGGAGCATAATCAACGCGACGAAGAGGAGGAATTTGGGATATCTCTCATGCGGGACTGGGAATCCAATCGACGATTGCTGGAGGTGCGATCCCAATTGGGAGAAGAATCGGCAGAGACTCGCCGACTGTGGAATTGGGTTCGGCAAAAACGCCATTGGCGGCCGTGACGGGCAAATCTACGTCGTCACCGACTCCGGCGACGACGATCCCGTCAACCCAAAACCGGGAACTCTCCGGTACGCAGTGATCCAAGACGAACCCCTTTGGATCATCTTCGCTCGCGACATGGTCATTCGATTGAAAGAGGAGCTGATCATGAACTCCTTCAAGACCATCGACGGCCGTGGCGCCAGTGTCCACATCGCCGGCGGACCCTGCATTACGATTCAGTACGTGACGAACATCATAATTCATGGACTGAACATTCACGACTGCAAGCAAGGAGGAAACACAGACGTGAGAGATTCCCCTCGGCATTTCGGGTTCAGAACGTTGTCGGACGGCGACGGCGTCTCGATCTTCGGCGGAAGCCATGTGTGGGTGGATCACTGCTCTTTGTCGAACTGTAACGATGGGTTGATCGACGCCATTCATGGGTCGACAGCAATCACGATTTCGAACAATTACATGACGCATCATGATAAAGTGATGCTGTTGGGGCACAGTGATTCGTACACTCAGGACAAGAATATGCAAGTCACCATTGCTTTTAACCACTTTGGTGAAGGCCTCGTCCAAAGAATGCCCAGATGCCGGCATGGGTATTTTCATGTGGTGAACAATGACTATACGCATTGGGAAATGTACGCCATTGGAGGAAGTGCTGCCCCAACCATCAACAGTCAAGGGAACAGATTTGTTGCACCAAATGACAGATTCAGCAAAGAGGTGACAAAATACGAGGATGCGCCAGAGAGTGAGTGGAAGAATTGGAATTGGAGGTCAGAAGGAGATTTGATGCAAAACGGTGCGTTTTTCACAGCGTCCGGCGCCGGAGCGTCGTCGAGCTACGCCAGAGCGTCGAGCTTAGGGGCACGGCCGTCGTCGCTCGTCGGAACGATTACGACCAATGCGGGTGCACTGAACTGCAGAAAGGGCTCCCGCTGCTGA 1224 53.84 MAPPSLPLSLLLSLFLLSSLSSALSAVQNPELIVQEVHRSIINATKRRNLGYLSCGTGNPIDDCWRCDPNWEKNRQRLADCGIGFGKNAIGGRDGQIYVVTDSGDDDPVNPKPGTLRYAVIQDEPLWIIFARDMVIRLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGLNIHDCKQGGNTDVRDSPRHFGFRTLSDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDSYTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSAAPTINSQGNRFVAPNDRFSKEVTKYEDAPESEWKNWNWRSEGDLMQNGAFFTASGAGASSSYARASSLGARPSSLVGTITTNAGALNCRKGSRC 407
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4115298 4116805 - Lag0024575.1 Lac10g0530 583061
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g0530 407 PANTHER PECTATE LYASE 18-RELATED 19 404 IPR045032 GO:0030570(InterPro)
Lac10g0530 407 SUPERFAMILY Pectin lyase-like 35 402 IPR011050 -
Lac10g0530 407 Pfam Pectate lyase 143 324 IPR002022 -
Lac10g0530 407 PRINTS Pollen allergen Amb family signature 105 130 IPR018082 -
Lac10g0530 407 PRINTS Pollen allergen Amb family signature 378 401 IPR018082 -
Lac10g0530 407 PRINTS Pollen allergen Amb family signature 349 373 IPR018082 -
Lac10g0530 407 PRINTS Pollen allergen Amb family signature 81 98 IPR018082 -
Lac10g0530 407 PRINTS Pollen allergen Amb family signature 307 326 IPR018082 -
Lac10g0530 407 PRINTS Pollen allergen Amb family signature 141 157 IPR018082 -
Lac10g0530 407 PRINTS Pollen allergen Amb family signature 285 304 IPR018082 -
Lac10g0530 407 PRINTS Pollen allergen Amb family signature 205 226 IPR018082 -
Lac10g0530 407 FunFam Pectate lyase 58 400 - -
Lac10g0530 407 Gene3D - 58 400 IPR012334 -
Lac10g0530 407 SMART amb_all 133 330 IPR002022 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0530 Lac-Chr10:4115298 Lac8g2540 Lac-Chr8:43165558 1.00E-189 dispersed
Lac10g0530 Lac-Chr10:4115298 Lac7g0490 Lac-Chr7:3919748 1.40E-173 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g0530 K01728 - csv:101209736 771.541