Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g0534 ATGCATGTTGTTGCCCGTTACTTCTCTCTGCACCGTGTCGACGCGCCATGGGTGGATGCAGCTGCTGCTTTGCTCATCCATCTCAAAGGTAGTGGTAGAGTAGATATGATGGGTCTTTTGTCGCAGCACAAAGTCTTTAAGCGCAGAAGCAGAAAAGCTCCAGTTGCTCCCAGAATGCCTCCCAAGACGGAACATGGAGCGTCGGACAGTTCCCTCGACGAAAACTCGAAGGCCGCCCATTCTTCTAAATTCGTCGTTCTTGCTGACCTCAACGTTGATCCTCCAGAAATGGACGAAGACAGTTCCGTTCACGTTTCAGCTTCGACTATCTCTAGGTTATCTATGGATGAGAGCAATCAAGACAAAACTGCGGCAATGTGCAAGGATACTAATACGATGGAAGTTGAAGGTAGACGTGTAAGCAAAATAGCAAAGTGCCGTTCAAGAAATAATAAGGTAGAGTACTCTCTTGATTCTGCAGCTGATGCAGATGGTGATCAACATGGTCAAGGTGTTTCAACTTCACGTGAAGAAAAAGTCAGCAGCCTCAAAACTGGTTTAGTTCATGTAGCAAGAAAGATGCCAAAAAATGCTCACGCTCATTTCATTCTTGGCCTGATGTACCAGAGGTTGGGTCAGCCACAAAAGGCTGTTTTAGCATATGAGAAGGCAGAGGAGATCTTACTCCAAAGTGATGTTGAGATTCACAGGCCAGAGCTGCTCTCATTGGTCCAAATTCATCATGCACAGTGTCTCCTTCTAGAAAGTGCAGGAGATAACAGTTCAGACAAAGAACTCGAACAGGAGGAGCTGGATGAGATTTTTTCTAAACTTAAGCATTCAATGCAATCTGATCTTAGACATGCATCTGTGTGGAATACCCTAGGCTTGATACTTCTTACTACTGGTCGAGTGAAGAGTGCAATTTCAGTGTTGTCATCCTTGTTGGCCATTGTCCCTAACAACTATGATTGCCTTGGAAACCTTGGAATTGCTTATCTTCAAAGTGGAAATATGGAACTATCAGAAAAATGTTTTCAAGAATTGATCCTGAAAGATCAAAATCATCCTGCTGCGCTCATCAACTATGCTGCTTTTCTCTCGTGCAAGTACGGTTCTACTGTTGTAGGTGCTGGAGCAAATGCTGGTGAAAGTGGTGTCGATGAGAAGGTTGTAGGTATGAATGTTGCAAAGGAATGTTTGCTAGCAGCTCTAAAGATAGATCCAAAAGCAGCACATGCATGGGCAAATCTTGCTAATGCGTATTTTGTAACTGGGGATCACAGAAGTTCTGCCAAGTGCTTGGAGAAGGGAGCAAAACTGGAGCCAAGTTGCATGTCTATGAGATATGCCGTTGCTATGCACCGACTTAAAGATGCAGAAAGGTCTCAAGATCGTAGTGAGCAGCTCTCCTGGGCTGGAAATGAAATGGCCTCAATTATTAGAGATGCTGATGGCTTGACAATCGATCATCCTGTAGCATGGGCAGGGCTTTCCATGGTTCACAAGACTCAACATGAAATTGCTGCTGGATTTCATACAGATCAGAGTGAGCTGAGAGAAGTGGAAGAACACGCTGTTTACAGTTTAAATCAGGCAATAGCTGAGGACCCAGATGATGCTGTTCAATGGCATCAATTCGGCCTCCACAGCCTCTGTACACGAGAATTTAAAACATCACAAAGATACCTCAAAGCTGCAATTGCCCGCTTTAAGAACTGTAGCTATGCATGGTCAAACCTAGGTATCTCGTTGCAACTCTCAGACAACCCGACACAGGCTGAAGAAGTATACAAGAAAGCTTTGTCCTTGGTAGCCACAGAACAAGCTCATACCGTATTTTGTAACCTCGGAAACCTATATCGACAGCTAAAGCAATACGAACGTGCCAAAGCTATGTTTTCAAAGTCTCTAGAACTGCAACCTGGTTATGCACCTGCATTTAACAATCTAGGATTAGTGTTTATAGCTGAGGGTCAATGGGATGAGGCTAAATATTGTTTTGAGAAAGCTCTCGAGGCTGATCCGTTGCTTGATTCAGCTAAGTCGAACATGATTAAAACAGTTGCTGTATCTCGCTTATGTAATGGCTCATCGTCATGTCATGTTAAAGATTGA 2118 43.96 MHVVARYFSLHRVDAPWVDAAAALLIHLKGSGRVDMMGLLSQHKVFKRRSRKAPVAPRMPPKTEHGASDSSLDENSKAAHSSKFVVLADLNVDPPEMDEDSSVHVSASTISRLSMDESNQDKTAAMCKDTNTMEVEGRRVSKIAKCRSRNNKVEYSLDSAADADGDQHGQGVSTSREEKVSSLKTGLVHVARKMPKNAHAHFILGLMYQRLGQPQKAVLAYEKAEEILLQSDVEIHRPELLSLVQIHHAQCLLLESAGDNSSDKELEQEELDEIFSKLKHSMQSDLRHASVWNTLGLILLTTGRVKSAISVLSSLLAIVPNNYDCLGNLGIAYLQSGNMELSEKCFQELILKDQNHPAALINYAAFLSCKYGSTVVGAGANAGESGVDEKVVGMNVAKECLLAALKIDPKAAHAWANLANAYFVTGDHRSSAKCLEKGAKLEPSCMSMRYAVAMHRLKDAERSQDRSEQLSWAGNEMASIIRDADGLTIDHPVAWAGLSMVHKTQHEIAAGFHTDQSELREVEEHAVYSLNQAIAEDPDDAVQWHQFGLHSLCTREFKTSQRYLKAAIARFKNCSYAWSNLGISLQLSDNPTQAEEVYKKALSLVATEQAHTVFCNLGNLYRQLKQYERAKAMFSKSLELQPGYAPAFNNLGLVFIAEGQWDEAKYCFEKALEADPLLDSAKSNMIKTVAVSRLCNGSSSCHVKD 705
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4146906 4154760 + Lag0024579.1 Lac10g0534 583065

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g0534 705 ProSiteProfiles TPR repeat profile. 412 445 IPR019734 GO:0005515(InterPro)
Lac10g0534 705 Gene3D Tetratricopeptide repeat domain 394 478 IPR011990 GO:0005515(InterPro)
Lac10g0534 705 ProSiteProfiles TPR repeat region circular profile. 611 642 - -
Lac10g0534 705 Pfam Tetratricopeptide repeat 198 227 IPR019734 GO:0005515(InterPro)
Lac10g0534 705 Pfam Tetratricopeptide repeat 412 444 IPR019734 GO:0005515(InterPro)
Lac10g0534 705 SMART tpr_5 323 356 IPR019734 GO:0005515(InterPro)
Lac10g0534 705 SMART tpr_5 289 322 IPR019734 GO:0005515(InterPro)
Lac10g0534 705 SMART tpr_5 575 608 IPR019734 GO:0005515(InterPro)
Lac10g0534 705 SMART tpr_5 412 445 IPR019734 GO:0005515(InterPro)
Lac10g0534 705 SMART tpr_5 198 231 IPR019734 GO:0005515(InterPro)
Lac10g0534 705 SMART tpr_5 611 644 IPR019734 GO:0005515(InterPro)
Lac10g0534 705 SMART tpr_5 645 678 IPR019734 GO:0005515(InterPro)
Lac10g0534 705 Gene3D Tetratricopeptide repeat domain 479 609 IPR011990 GO:0005515(InterPro)
Lac10g0534 705 ProSiteProfiles TPR repeat profile. 611 644 IPR019734 GO:0005515(InterPro)
Lac10g0534 705 Gene3D Tetratricopeptide repeat domain 610 688 IPR011990 GO:0005515(InterPro)
Lac10g0534 705 ProSiteProfiles TPR repeat profile. 645 678 IPR019734 GO:0005515(InterPro)
Lac10g0534 705 Pfam Tetratricopeptide repeat 612 674 - -
Lac10g0534 705 SUPERFAMILY TPR-like 524 676 IPR011990 GO:0005515(InterPro)
Lac10g0534 705 Gene3D Tetratricopeptide repeat domain 172 373 IPR011990 GO:0005515(InterPro)
Lac10g0534 705 MobiDBLite consensus disorder prediction 158 179 - -
Lac10g0534 705 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEIN-RELATED 85 703 - -
Lac10g0534 705 ProSiteProfiles TPR repeat profile. 198 231 IPR019734 GO:0005515(InterPro)
Lac10g0534 705 Pfam Tetratricopeptide repeat 300 359 - -
Lac10g0534 705 ProSiteProfiles TPR repeat profile. 289 322 IPR019734 GO:0005515(InterPro)
Lac10g0534 705 SUPERFAMILY TPR-like 192 466 IPR011990 GO:0005515(InterPro)
Lac10g0534 705 ProSiteProfiles TPR repeat region circular profile. 645 676 - -
Lac10g0534 705 MobiDBLite consensus disorder prediction 47 75 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g0534 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g884 Blo04g00710 . . . . . . . Cmo13g00806 . . . . . . Cpe20g00336 . . . . . . . . . . . . . . . . . Cone13ag0196 . Lsi02g00462 Csa01g00919 Chy12g01208 Cme12g01629 . . . Bda14g00783 . Bpe15g00663 Bma03g00758 . . . . Cma13g00775 . Car13g00621 . . . Bhi08g01689 . . Lac10g0534 . . . Cla03g00319 . . . Clacu03g0337 Cmu03g0943 . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009614 2 2 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 32