Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g0536 ATGGCAGCCACAGCACTGGCCGCGGAGCCGACGCAAGAGGTACTTTCCTGGCTCAAAACCCTACCTTTGGCTCCTGAATATCACCCCACTTTGGCAGAGTTTCAAGATCCAATTTCATACATTTTCAAGATCGAAAAAGAGGCTTCCAAGTTTGGAATCTGCAAAATTGTGCCCCCTGTGCCTCCTTCACCGAAGAAAACTGTAATTGTCAATTTCAATAGGTCGCTTGCAGCTCGTGCGCCCTGTTCTGACTCGAGTAATTCCAAGTCTCCGCCTACATTCACAACTCGCCAACAGCAGATCGGGTTTTGCCCGCGAAAAACACGGCCGGTTCAGAAATCAGTGTGGCAGAGCGGCGAGTACTACACATTCCAGCAATTTGAGGCTAAGGCCAAGGCCTTCGAGAAGAGCTATTTCAAGAAATGTGCGAAGAAAGGGGGGCTTTCGCCTTTGGAAATCGAGACGCTCTATTGGAGGGCCACTCTGGACAAGCCGTTTTCGGTGGAATATGCGAATGATATGCCTGGTTCGGCCTTTGTGCCTGTTAGTGCAAAAATGCTTAGGGAGGCAGGGGAAGGCACGACGCTTGGTGAGACTGCCTGGAACATGAGAGGGGTGTCTAGGGCGAAAGGGTCTCTGTTGAAGTTTATGAAGGAAGAGATTCCAGGAGTTACTTCGCCAATGGTGTATGTTGCTATGATGTTTAGCTGGTTTGCTTGGCATGTGGAAGACCATGATTTGCATAGCTTAAATTACCTGCATATGGGGGCGGGAAAAACTTGGTATGGCGTACCGAGAGATGCTGCTGTGGCGTTTGAGGAGGTTGTTAGGGTTCAGGGATACGGAGGAGAAATTAATCCCCTTGTTACTTTTGCTGTTCTTGGTGAGAAGACCACTGTGATGTCACCTGAAGTTCTAGTTAGCGCTGGAGTTCCATGTTGCAGGTTAGTGCAAAATGCAGGTGAATTTGTTGTCACTTTTCCTCGAGCTTATCATACAGGTTTCAGCCATGGATTTAACTGTGGGGAGGCAGCCAATATTGCAACTCCAGAATGGTTAAGGGTCGCTAAAGATGCTGCAGTTCGTAGAGCTTCGATCAATTATCCTCCAATGGTCTCTCATTTTCAGTTGCTATATGATCTTGCTCTAAGTTCCAGAGCTCCTCTGTGCACTGGTGCTGAACCAAGAAGTTCACGACTGAAAGATAAAAGAAGGGGTGAAGGGGAAACAGTTATAAAAGAGTTATTTGTACAGAATATTGTAGAGAATAACAGCCTGCTGGACATTCTCGGAAGAGGAGCTTCAGTTGTACTTCTTCCCCAAGGTTCTTCAGATTCCATTTATTCGAGACTACGTGTTGGATCCCACTTGAGAGCAAAACCTAGATTTCCTGCTGGTTTTTGCAATTCTAAGGAAGAAGCCAAATCTCCTGAAAGTTTTGAATATGATAATCTCACACTAGAAAACAGCCAGGGAATGAATCGAGTTAAAGGTTTCTATTCAGCCAAGGGACGATATTCTACTCTATCTGAGAGAAGCACGGGTAATTTATGTGCTTCAAGTTCAAGGACTTTGAATGGCAACAATGAACGGGGAGGTAGTGTTCATTGCGATGGACTATCAGACCAAAGACTGTTTTCTTGTGTCACTTGTGGTATTTTAAGCTTTGCCTGTGTAGCCATCATCCAACCCAGAGAACAAGCTGCTAGGTACCTTATGTCAGCTGACTGTAGCTTCTTTAATGATTGGGTTGTTGGTTCTGGGATAACCAGTGAAGGGATTGCTATTAGAGATGGGTATGCTGCTACTTCTCAGCAGATTTGTAATATTGGAAAAACAGAAAAGTGTGTCTCTGATGGTTTGTATGACGTCCCAGTCCAGGCTGTCAATCGCCAGCTTCCAGTAGCAGATCAAAGTTTCGAAGCTAATTTAAATACTGAAAAACGGAATGAGACTTCTGCTCTTGGCATGCTCGCATTGACTTATGGACATTCTTCTGATTCTGAGGAGGATAATGCTGAAGCAGATGCTGCTTTACATGCTGATGATGCTAAACTAATGATTTGTTCTTCAGAAGACCGATATCAGTTCGAGAATTCTAGTCTTACTTCTAGTGAATATTGTAAAAACAGTGCAACTTTGAATCATGATTCCTCGTCATTTAGTGTTAACACTGCAGATCAAATGCACTTTCAAGTCAACGACTATGAAGAATTTGGACGAGCTAGATTTGATTCCAAAAACTCATTCAATTGTTCTTCTGAGTTTGAAAGTGATGGCATAGGTTCAACTAAGAAAAATGGCTTGTCAACTAGATATCAAGATTCACATGTGAACGGCAAATCTTCCTTGGATGCTGATACTGACAAACCAATGTTTGACAAGTCCGCTGAATCAGTGGAGATTGAGAATATGCCATTTGCTCCAGATATCGATGAAGACTCCTCTAGGTTGCATGTATTCTGTCTAGAGCATGCAAAAGAAGTGGAACAACAACTTCGCCCAATTGGAGGAGTGCATATTCTTTTACTTTGTCATCCAGACTATCCGAAGATGGAGGCAGAAGCAAAATTGGTGGCACAAGAATTAAGTATTGACCATCTGTGGACAGATACGATGTTCAGAGGTGCCACCCAAGATGAGGAAAAGAGGATTCAGTTAGCTTTAGATAGCGAGGAAGCAATTCCGGGTAATGGAGATTGGGCTGTAAAGTTGGGAATTAATCTCTTTTATAGTGCCAACCTTAGTCACTCTCCTCTTTATAGTAAGCAGATGCCATACAACTCTGTTATTTATAATGCATTTGGCCGTAGTACTTCTGCTAACTCTTCTGGTAAGCCGAAAGTCTATCAAAGGAGGACTGGCAAGCTGAAAAGGGTAGTTGCAGGGAAATGGTGTGGGAAAGTCTGGATGTCAAATCAAGTTCATCCTTTGCTAGCAAAGAGAGATCCTGGAGAAGAAGATGTGGACATCTTCCATTCTTGGACAATGTCAGATGAGAAGGTTGATAGGAAATCAGAAAATATCCAGAAAAATGAGACTGTTATGGTAAATAGAAAATCTGCTGGCAAGAGAAAAATGACTTACGGGAGTGGGACAACTAAGAAAGCTAAACCGGTAGAGTCAGAGGACATGGTTTCAGATGATTCAGTTGAAGATTGTATTCGTCAGCATCATAGGATTCTACGAAACAAGCGATCTAAAATTGTTGAGAGCCATGATGCTATGTCAGATGATTCTGTGGAGGATGATTCTTATAAAAAACATGGAGGAATTCCCATCAGCGAGGGAGATTATTGTGAGACAGATGACACTGGTTCGAATGATTCTCTCAGAGATCGTCATATTCAGCAGCACAGAGGGTTCTCTGGATTCAAGCTGCCCAAATGGGGTGAGATAGAACCTGCAGTTTCTGACGATTCCTTAGAGCATGATTCTTCTCAGCATCGCGGGAAAAAGAGTAAAAGGAAGATTGAAAAATATATTGAGAGACAAGATGCACTTTCGGATGAGGGTCTGGAGAGTGATTCTCTTAAGCAATATAGAAGGATTCCGAGAAGCAAGCAAACCAAAGTTCTTAAAAAGAATGCCCTTTCACATGATATACGGGATGATAGTTTCCTTTGGCATCATCAAAGGACTTCTAGAAGCAAGAAGGTCACTATCGAGAGTGAAGATGCAGTTTCAGAGGACTCCCTAGAAAATAATTCTCATCTGCATAGGAGTATGCCTCGAAGCAAACCAGCCAAACGCACTGCGAGGGAAGATGCATTTTCAGATGATCCAGATGAAGATGATAATTCTCTTTTGCACCATAGAAAAATTATAAGAAACGAGCAATCCAAATACATTGAGAGAGAAAATACATCAGACGACCAACTTGATGATAGTGCTAATCAGTGCAGGAGGAGGGTACTCCGAAGTAAGCCAGTTAAGACAGAGACCATTTCTCAAATGAAACAAGAAATCCTGCGACCTGGAAAGCGAGGAGCCTCTCAGACTTTGAAAGAAGAATTCTCTCAACCTCTAAAACGGGGAGGCCGCCATACGTTAAAATTAGAAACCCCTCAGCCAACAAAACAACAAGCCACAAATCGGCGCGGTAAGCAAGCTAAGAAGAATAGTAAATTGACTGATTTAGAATCAGAGGAAGAGCAACCAGGTGGACCTAGCACACGTCTTAGGAAAAGAACTCCAAAGCCTACCAAACTTTCAGAAGCAAAACTGAAAGATAAAAAACCAACTGGTAAGAAGAAGGTGAAGAATGCTTCATCTTTGAAGACTCCAGCAGGCCATAGAGATTCAAAAGCAAGGGATGAGGAATCAGAATATCTTTGTGATATCGAGGGTTGTAATATGAGTTTTGGTTCAAAACAAGAACTTGTCTTGCACAAACGAAACATTTGCCCTGTCAAGGGGTGTGGAAAGAAGTTTTTCTCACACAAGTACCTTGTGCAGCATCGTCGAGTACACTTGGACGATCGTCCCCTCAAATGTCCATGGAAGGGCTGCAAGATGACTTTCAAATGGGCATGGGCAAAAACCGAACATATTCGGGTTCATACAGGTGCCCGACCTTATGTTTGTGCCGAACCAGGATGTGGTCAGACATTCAGATTTGTGTCGGATTTCAGTCGTCACAAGCGGAAGACTGGACATTCAACAAAGAAAGGTAGAGGTTAA 4683 43.16 MAATALAAEPTQEVLSWLKTLPLAPEYHPTLAEFQDPISYIFKIEKEASKFGICKIVPPVPPSPKKTVIVNFNRSLAARAPCSDSSNSKSPPTFTTRQQQIGFCPRKTRPVQKSVWQSGEYYTFQQFEAKAKAFEKSYFKKCAKKGGLSPLEIETLYWRATLDKPFSVEYANDMPGSAFVPVSAKMLREAGEGTTLGETAWNMRGVSRAKGSLLKFMKEEIPGVTSPMVYVAMMFSWFAWHVEDHDLHSLNYLHMGAGKTWYGVPRDAAVAFEEVVRVQGYGGEINPLVTFAVLGEKTTVMSPEVLVSAGVPCCRLVQNAGEFVVTFPRAYHTGFSHGFNCGEAANIATPEWLRVAKDAAVRRASINYPPMVSHFQLLYDLALSSRAPLCTGAEPRSSRLKDKRRGEGETVIKELFVQNIVENNSLLDILGRGASVVLLPQGSSDSIYSRLRVGSHLRAKPRFPAGFCNSKEEAKSPESFEYDNLTLENSQGMNRVKGFYSAKGRYSTLSERSTGNLCASSSRTLNGNNERGGSVHCDGLSDQRLFSCVTCGILSFACVAIIQPREQAARYLMSADCSFFNDWVVGSGITSEGIAIRDGYAATSQQICNIGKTEKCVSDGLYDVPVQAVNRQLPVADQSFEANLNTEKRNETSALGMLALTYGHSSDSEEDNAEADAALHADDAKLMICSSEDRYQFENSSLTSSEYCKNSATLNHDSSSFSVNTADQMHFQVNDYEEFGRARFDSKNSFNCSSEFESDGIGSTKKNGLSTRYQDSHVNGKSSLDADTDKPMFDKSAESVEIENMPFAPDIDEDSSRLHVFCLEHAKEVEQQLRPIGGVHILLLCHPDYPKMEAEAKLVAQELSIDHLWTDTMFRGATQDEEKRIQLALDSEEAIPGNGDWAVKLGINLFYSANLSHSPLYSKQMPYNSVIYNAFGRSTSANSSGKPKVYQRRTGKLKRVVAGKWCGKVWMSNQVHPLLAKRDPGEEDVDIFHSWTMSDEKVDRKSENIQKNETVMVNRKSAGKRKMTYGSGTTKKAKPVESEDMVSDDSVEDCIRQHHRILRNKRSKIVESHDAMSDDSVEDDSYKKHGGIPISEGDYCETDDTGSNDSLRDRHIQQHRGFSGFKLPKWGEIEPAVSDDSLEHDSSQHRGKKSKRKIEKYIERQDALSDEGLESDSLKQYRRIPRSKQTKVLKKNALSHDIRDDSFLWHHQRTSRSKKVTIESEDAVSEDSLENNSHLHRSMPRSKPAKRTAREDAFSDDPDEDDNSLLHHRKIIRNEQSKYIERENTSDDQLDDSANQCRRRVLRSKPVKTETISQMKQEILRPGKRGASQTLKEEFSQPLKRGGRHTLKLETPQPTKQQATNRRGKQAKKNSKLTDLESEEEQPGGPSTRLRKRTPKPTKLSEAKLKDKKPTGKKKVKNASSLKTPAGHRDSKARDEESEYLCDIEGCNMSFGSKQELVLHKRNICPVKGCGKKFFSHKYLVQHRRVHLDDRPLKCPWKGCKMTFKWAWAKTEHIRVHTGARPYVCAEPGCGQTFRFVSDFSRHKRKTGHSTKKGRG 1560
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4169149 4176475 + Lag0024581.1 Lac10g0536 583067

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g0536 1560 Pfam JmjC domain, hydroxylase 229 346 IPR003347 -
Lac10g0536 1560 ProSitePatterns Zinc finger C2H2 type domain signature. 1499 1521 IPR013087 -
Lac10g0536 1560 SUPERFAMILY Clavaminate synthase-like 209 375 - -
Lac10g0536 1560 SUPERFAMILY beta-beta-alpha zinc fingers 1507 1551 IPR036236 -
Lac10g0536 1560 FunFam Probable lysine-specific demethylase ELF6 1494 1523 - -
Lac10g0536 1560 MobiDBLite consensus disorder prediction 1214 1439 - -
Lac10g0536 1560 ProSiteProfiles Zinc finger C2H2 type domain profile. 1467 1496 IPR013087 -
Lac10g0536 1560 ProSiteProfiles JmjN domain profile. 24 65 IPR003349 -
Lac10g0536 1560 MobiDBLite consensus disorder prediction 1372 1391 - -
Lac10g0536 1560 MobiDBLite consensus disorder prediction 757 791 - -
Lac10g0536 1560 MobiDBLite consensus disorder prediction 757 781 - -
Lac10g0536 1560 MobiDBLite consensus disorder prediction 1066 1112 - -
Lac10g0536 1560 Gene3D Classic Zinc Finger 1465 1551 - -
Lac10g0536 1560 MobiDBLite consensus disorder prediction 1067 1091 - -
Lac10g0536 1560 MobiDBLite consensus disorder prediction 1399 1413 - -
Lac10g0536 1560 SMART c2h2final6 1527 1553 IPR013087 -
Lac10g0536 1560 SMART c2h2final6 1497 1521 IPR013087 -
Lac10g0536 1560 SMART c2h2final6 1444 1466 IPR013087 -
Lac10g0536 1560 SMART c2h2final6 1467 1491 IPR013087 -
Lac10g0536 1560 MobiDBLite consensus disorder prediction 1248 1310 - -
Lac10g0536 1560 MobiDBLite consensus disorder prediction 1137 1158 - -
Lac10g0536 1560 ProSitePatterns Zinc finger C2H2 type domain signature. 1529 1553 IPR013087 -
Lac10g0536 1560 ProSiteProfiles Zinc finger C2H2 type domain profile. 1527 1558 IPR013087 -
Lac10g0536 1560 MobiDBLite consensus disorder prediction 1021 1045 - -
Lac10g0536 1560 ProSitePatterns Zinc finger C2H2 type domain signature. 1469 1491 IPR013087 -
Lac10g0536 1560 FunFam Probable lysine-specific demethylase ELF6 1524 1553 - -
Lac10g0536 1560 ProSiteProfiles JmjC domain profile. 198 364 IPR003347 -
Lac10g0536 1560 SMART JmjN_1 23 64 IPR003349 -
Lac10g0536 1560 Gene3D Cupin 17 368 - -
Lac10g0536 1560 MobiDBLite consensus disorder prediction 1214 1241 - -
Lac10g0536 1560 FunFam Probable lysine-specific demethylase ELF6 17 368 - -
Lac10g0536 1560 PANTHER LYSINE-SPECIFIC DEMETHYLASE 17 1370 - GO:0000785(PANTHER)|GO:0005634(PANTHER)|GO:0006338(PANTHER)|GO:0010468(PANTHER)|GO:0032452(PANTHER)|GO:0034647(PANTHER)
Lac10g0536 1560 SUPERFAMILY beta-beta-alpha zinc fingers 1465 1503 IPR036236 -
Lac10g0536 1560 SMART cupin_9 195 364 IPR003347 -
Lac10g0536 1560 Pfam jmjN domain 25 58 IPR003349 -
Lac10g0536 1560 ProSiteProfiles Zinc finger C2H2 type domain profile. 1497 1526 IPR013087 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g0536 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0536 Lac-Chr10:4169149 Lac8g2403 Lac-Chr8:42125396 1.60E-09 dispersed
Lac10g0536 Lac-Chr10:4169149 Lac5g0192 Lac-Chr5:1650264 1.70E-70 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g892 . . . . . . . . . Cmo18g00183 . . . . . Cpe20g00334 . . . . . . . . . . . . . . . Cone2ag0949 Cone16ag0052 . . Lsi02g00464 Csa01g00920 Chy12g01206 Cme12g01627 . . . . Bpe07g00876 . . . Sed08g2466 . . . Cma18g00207 Car13g00624 Car18g00201 Cpe09g00989 . Bhi08g01693 Tan05g2897 Cmetu10g1062 Lac10g0536 Hepe07g2164 . . Cla03g00321 Cam03g0337 Cec03g0329 Cco03g0343 Clacu03g0339 Cmu03g0945 Cre03g0638 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008005 0 1 1 1 1 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22733 PF02373 JmjC 1.20E-36 CL0029 Lac TF