Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g0537 ATGGAACCTTCTGAAGCTGTTTCGGTCCCTAATCACAGTGAAGCACTGGCTTCTGGGTTTCAATCTTCAGAGTTTCATGGTTCTGTTCTTGATCCTGCATCATTGGATGCACAGCATGTGGCCACAGATGATCGCATCCATGCAGAACTTCAGAAATTGGATTTGAAGGATGAGAAAGAGGAGGCGGCGAAGGATTATGACGAGGGTAGAGAATGGGAAGTTGAGAAGAATCCCGGTGAAGGTGAAGCTGAAGGTGAAGGTGAAGGAAATGCTATGAAGAAGATCGATGAGAGTGATCGAGATAGAACCATTAGGAATGAGGATGACGATGACGATGAGGAGGTAGATGCAGGCGACGGTGACGGCGACGGTGGTGAGGTGGAGAAGAAAGGGGAAATGAGGGCCAAAAACAACCAGTACCCAGTACGGCCTGAGGCTGAAGATTGTGCCTTTTACCTTAAGACTGGGACTTGCAAGTTCGGATCATTTTGCAAATTCAATCACCCTGTGCGAAAGAGAAACCAGGTTGTTCCTGAGAAATTGAAGAATGAGGACGATCCATCTGGGCAGGCGAGCAAGACAGAATGCAAGTTTTACTTGAGGACCGGGGGTTGTAAATTTGGAAAAGCCTGTAGATATAACCACACAAGACCGAGAGCATTGGCAAATCCAATACTAGAGCTTAACTTCCTTGGTCTGCCAATCCGACCAGAGGAAAAAGAATGTCCCTATTACATGCGCACAGGATCCTGCAAATATGGAGCAAACTGCAGGTTTAATCATCCTGATCCTACAACTGTTGCTGTACCTGAATCTCCTTCAGGATATAATAATGGAGTGCCCCTTCAAGGTGCAACACAATCACAGATCACTTCCTGGACTTCACCAAGAGTACTGAATGAAACCACGACATTTGTACCTTCCATGATTTCACCATCTCAAGATTCAGAATGGAGTGCATACCAGGCTCCCATATATCCATCAGAAATAAGTGTTCTTCCACCTCCCACATATGTTGTGAACAATATAACATCTGAGACGGATCTGTATCCTTCTCATCAGCAAGTGGAAGAATATCCCGAACGACCTGGTCAACCCGAATGCAGTTACTTTCTAAAGACGGGGGATTGTAAATTTAAATCTCTTTGCAAATATCACCATCCAAAGAATCGGAACCCAAAGTTACCAACCTGCACTCTCAATGACAAAGGGCTGCCTTTGAGACCTGATCAGAACGTATGCACGTATTATAGTCGCTACGGCATTTGCAAGTTTGGGCCATCTTGCAAGTTCGACCATCCCATTCTTCCAGCTTCAACTGCGAGCGAGCTTGAACAGCAACCTCACTACAGCAACTTTACCGCTGCAGAAGGGGCTGAAATAGCCGGAGGAGGGAGCGGAAACAGTGCCACAGTTGAGCAGTCTGCATGA 1431 46.26 MEPSEAVSVPNHSEALASGFQSSEFHGSVLDPASLDAQHVATDDRIHAELQKLDLKDEKEEAAKDYDEGREWEVEKNPGEGEAEGEGEGNAMKKIDESDRDRTIRNEDDDDDEEVDAGDGDGDGGEVEKKGEMRAKNNQYPVRPEAEDCAFYLKTGTCKFGSFCKFNHPVRKRNQVVPEKLKNEDDPSGQASKTECKFYLRTGGCKFGKACRYNHTRPRALANPILELNFLGLPIRPEEKECPYYMRTGSCKYGANCRFNHPDPTTVAVPESPSGYNNGVPLQGATQSQITSWTSPRVLNETTTFVPSMISPSQDSEWSAYQAPIYPSEISVLPPPTYVVNNITSETDLYPSHQQVEEYPERPGQPECSYFLKTGDCKFKSLCKYHHPKNRNPKLPTCTLNDKGLPLRPDQNVCTYYSRYGICKFGPSCKFDHPILPASTASELEQQPHYSNFTAAEGAEIAGGGSGNSATVEQSA 476
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4178558 4182599 + Lag0024582.1 Lac10g0537 583068

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g0537 476 Gene3D - 185 274 - -
Lac10g0537 476 Gene3D - 408 460 - -
Lac10g0537 476 SUPERFAMILY CCCH zinc finger 194 218 IPR036855 GO:0046872(InterPro)
Lac10g0537 476 SUPERFAMILY CCCH zinc finger 143 173 IPR036855 GO:0046872(InterPro)
Lac10g0537 476 ProSiteProfiles Zinc finger C3H1-type profile. 362 390 IPR000571 GO:0046872(InterPro)
Lac10g0537 476 MobiDBLite consensus disorder prediction 106 121 - -
Lac10g0537 476 SUPERFAMILY CCCH zinc finger 235 264 IPR036855 GO:0046872(InterPro)
Lac10g0537 476 MobiDBLite consensus disorder prediction 454 476 - -
Lac10g0537 476 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 410 434 IPR000571 GO:0046872(InterPro)
Lac10g0537 476 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 239 262 IPR000571 GO:0046872(InterPro)
Lac10g0537 476 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 363 389 IPR000571 GO:0046872(InterPro)
Lac10g0537 476 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 194 216 IPR000571 GO:0046872(InterPro)
Lac10g0537 476 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 147 169 IPR000571 GO:0046872(InterPro)
Lac10g0537 476 ProSiteProfiles Zinc finger C3H1-type profile. 143 171 IPR000571 GO:0046872(InterPro)
Lac10g0537 476 MobiDBLite consensus disorder prediction 49 139 - -
Lac10g0537 476 SUPERFAMILY CCCH zinc finger 406 434 IPR036855 GO:0046872(InterPro)
Lac10g0537 476 MobiDBLite consensus disorder prediction 122 136 - -
Lac10g0537 476 MobiDBLite consensus disorder prediction 1 20 - -
Lac10g0537 476 PANTHER PROTEIN PHOSPHATASE RELATED 59 436 IPR050974 GO:0003729(PANTHER)
Lac10g0537 476 SMART c3hfinal6 362 389 IPR000571 GO:0046872(InterPro)
Lac10g0537 476 SMART c3hfinal6 408 435 IPR000571 GO:0046872(InterPro)
Lac10g0537 476 SMART c3hfinal6 191 217 IPR000571 GO:0046872(InterPro)
Lac10g0537 476 SMART c3hfinal6 236 263 IPR000571 GO:0046872(InterPro)
Lac10g0537 476 SMART c3hfinal6 143 170 IPR000571 GO:0046872(InterPro)
Lac10g0537 476 Gene3D - 123 180 - -
Lac10g0537 476 Gene3D - 322 395 - -
Lac10g0537 476 MobiDBLite consensus disorder prediction 49 105 - -
Lac10g0537 476 ProSiteProfiles Zinc finger C3H1-type profile. 190 218 IPR000571 GO:0046872(InterPro)
Lac10g0537 476 ProSiteProfiles Zinc finger C3H1-type profile. 408 436 IPR000571 GO:0046872(InterPro)
Lac10g0537 476 ProSiteProfiles Zinc finger C3H1-type profile. 236 264 IPR000571 GO:0046872(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g0537 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0537 Lac-Chr10:4178558 Lac3g1698 Lac-Chr3:17058112 5.70E-22 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g893 Blo04g00708 Blo16g00248 . . . Bpe13g00218 Bma06g00242 . Cmo13g00808 Cmo18g00184 . . . . . Cpe20g00333 . . . . . . . . . . . . . . . Cone2ag0950 Cone16ag0051 . . Lsi02g00466 Csa01g00921 Chy12g01205 Cme12g01626 . . Bda11g01626 Bda14g00777 . Bpe15g00167 Bma03g00756 . Sed08g2465 . . Cma13g00777 Cma18g00208 Car13g00625 Car18g00202 Cpe09g00988 . Bhi08g01694 Tan05g2898 Cmetu12g0034 Lac10g0537 Hepe07g2163 . . Cla03g00322 Cam03g0338 Cec03g0330 Cco03g0344 Clacu03g0340 Cmu03g0946 Cre03g0639 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004285 3 1 3 2 2 1 2 1 1 1 1 1 1 1 1 1 1 3 2 1 1 1 1 1 1 2 1 2 1 2 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22734 PF00642 zf-CCCH 5.70E-09 CL0537 Lac TF