Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g0539 ATGGCATATCCGGAATCTGCAAATGCAGAACGAGAGGTGATGCCAGTCAGTAATGCTCAGAGGAAACCCAGGATTTTGCTTGCTGCCAGTGGAAGTGTAGCTTCAATTAAGTTTGGAAATCTCTATCATTCTTTCTCCGAATGGGCAGACGTTAGAGCAGTGGCTACGAGGGCCTCTTTGCACTTCATCGATCGAGCATCTCTTCCTAAGGATGCCATACTGTACACCGATGAAGATGAGTGGACTGGTTGGAACAAAATTGGAGATAGTGTTCTTCATATTGAGCTTCGCCGGTGGGCTGATATCATGGTCATTGCCCCTCTGTCTGCAAACACGCTTGGCAAGATTGCAGGTGGATTATGTGACAATCTATTGACTTGTATCGTGCGAGCGTGGGACTATAACAAGCCACTCTTTGTTGCACCAGCCATGAATACCTTTATGTGGACCAACCCTTTCACCGAGCGGCATCTCATTGCAATTGATGAGCTTGGGATAACTCTCATTCCACCTGTGACCAAGAGGCTAGCCTGTGGGGACTACGGCAATGGTGCTATGGCTGAACCTTCCTTGATCTTCTCGACTGTGAGACTTTTCTATGAGTCACGAATGCAGCAAAGTGCCAGAAATGGTGATAGTTAG 642 47.35 MAYPESANAEREVMPVSNAQRKPRILLAASGSVASIKFGNLYHSFSEWADVRAVATRASLHFIDRASLPKDAILYTDEDEWTGWNKIGDSVLHIELRRWADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYNKPLFVAPAMNTFMWTNPFTERHLIAIDELGITLIPPVTKRLACGDYGNGAMAEPSLIFSTVRLFYESRMQQSARNGDS 213
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4188777 4190241 + Lag0024584.1 Lac10g0539 583070

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g0539 213 Pfam Flavoprotein 24 195 IPR003382 GO:0003824(InterPro)
Lac10g0539 213 FunFam Phosphopantothenoylcysteine decarboxylase 17 209 - -
Lac10g0539 213 SUPERFAMILY Homo-oligomeric flavin-containing Cys decarboxylases, HFCD 22 199 IPR036551 GO:0003824(InterPro)
Lac10g0539 213 Gene3D - 8 207 IPR036551 GO:0003824(InterPro)
Lac10g0539 213 PANTHER HOMO-OLIGOMERIC FLAVIN CONTAINING CYS DECARBOXYLASE FAMILY 20 206 - GO:0004633(PANTHER)|GO:0010181(PANTHER)|GO:0015937(PANTHER)|GO:0071513(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g0539 K01598 - - csv:101211378 420.624
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0539 Lac-Chr10:4188777 Lac3g0111 Lac-Chr3:806190 1.90E-73 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g898 . Blo16g00249 . . . Bpe13g00216 Bma06g00244 . Cmo13g00809 Cmo18g00187 Cma10g00076 . . . . . . . . . . . . . . . . . . . . Cone2ag0951 Cone16ag0049 . . Lsi02g00468 Csa01g00924 Chy12g01202 . . . Bda11g01624 . . Bpe15g00667 . . Sed01g1585 . . . Cma18g00210 Car13g00626 . . Cpe18g00886 Bhi08g01698 Tan05g2901 Cmetu12g1074 Lac10g0539 . . . Cla03g00324 Cam03g0341 Cec03g0333 Cco03g0346 Clacu03g0343 Cmu03g0948 Cre03g0641 . Csa01g00077 . Cme02g02055
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002582 1 3 1 1 2 2 2 1 2 1 1 2 3 1 2 4 2 2 2 2 2 2 2 2 2 1 2 4 3 1 58