Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g0562 ATGGCAGATCGGAAGCCGAACTTCAATACCTGCCATTTCGTCGATCCTCGAAGCGGTTTCTGTCCTGAAACGAAGATTTTCCACAGCCTCCGACCACCGCTCTCACTTCCGCCAATATCTCAGCCTCTCTCAATCACTCAAAACGCCCTTTCTTTCCTCCAATCATCTCCTCCTCCGGCAAACGCCACCGTTCTCGTCGACTCCAACTCCGGCGTCCATCTCTCCTACGCCATTTTCCTCCGTCAAATTCGAATCCTCGCCGCTAATCTTAAAGCCCTAACCTCCCTCTCCAATGGTCAAGTGGCGTTTATTCTTGCACCGACTTCTCTGCAAGTCCCTGTGTTGTATTTCGCTCTGTTATCTCTCGGTGTTGTTACATCTCCGGCTAATCCAACCGGTTCCGATTCGGAGATCGCTCATCAGGTTCAACTCTGTAAACCGATTCGCCGGAGTTTTTTCTCTATGACGAGTGAAAGCAATCGATTGGATGGAATAGACGACGGTGCTGCCAATGTCAAAATCAATCAATCCGACGCGGCGGCGATTCTGTACTCATCAGGCACTACAGGGCGAGTGAAAGGCGTCCTACTGACGCACCGGAACTTCGTTGCGGCAAACTCTGGGGTTCATGGTTTACAATTGACGGTCAACTCAGAAGAGACGGAGCGACATCCTGTGTTTTTGTGTCTGTTGCCTCTGTTCCATGTTTTCGGGTTCGCCATGTTGATTCGAGCAATTTCACGAAGCCAGACCGTGGTTTTGATGCAGAGATTCGACTTCGAGGGGATGTTAAGAGCAGTGGAGAAGTATAAGGTCGCGTACATATCGGTTACTCCGCCGCTTGTGGTGGCGTTGGCCAAATCGGAGTTGGTGGCGAAGTACAACCTCAGTTCTCTTCGAATTTTGGGATGCGGCGGCGCTCCTCTTGGGAAAGAAGTCGTTGAGAAATTCCGTTATAAGTTTCCCAACGTTGAAATTTTACAGGGATATGGCTTGACAGAGAGTATAGTTGTAGCACGGACTTTGGGGTGTGAGGAAAGCAAGAACACAAGTTCAGTAGGCCGCCTAGCTGAAAGTGTTGAAGCCAAGATTGTGGATCCTGCATCTGGAGAGGCCTTACCTCCTGGCCAGAAAGGAGAGCTTTGGTTGGGAGGTCTTGGAATCATGAAAGGTTATGTTGGAGATGACAAGGCAACTGTTGAAGCTTTGCATCCCGATGGATGGCTAAAAAACTGGTGA 1239 49.8 MADRKPNFNTCHFVDPRSGFCPETKIFHSLRPPLSLPPISQPLSITQNALSFLQSSPPPANATVLVDSNSGVHLSYAIFLRQIRILAANLKALTSLSNGQVAFILAPTSLQVPVLYFALLSLGVVTSPANPTGSDSEIAHQVQLCKPIRRSFFSMTSESNRLDGIDDGAANVKINQSDAAAILYSSGTTGRVKGVLLTHRNFVAANSGVHGLQLTVNSEETERHPVFLCLLPLFHVFGFAMLIRAISRSQTVVLMQRFDFEGMLRAVEKYKVAYISVTPPLVVALAKSELVAKYNLSSLRILGCGGAPLGKEVVEKFRYKFPNVEILQGYGLTESIVVARTLGCEESKNTSSVGRLAESVEAKIVDPASGEALPPGQKGELWLGGLGIMKGYVGDDKATVEALHPDGWLKNW 412
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4324959 4326687 - Lag0024607.1 Lac10g0562 583093
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g0562 412 Gene3D - 35 411 IPR042099 -
Lac10g0562 412 ProSitePatterns Putative AMP-binding domain signature. 182 193 IPR020845 -
Lac10g0562 412 Pfam AMP-binding enzyme 169 392 IPR000873 -
Lac10g0562 412 Pfam AMP-binding enzyme 59 146 IPR000873 -
Lac10g0562 412 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 20 410 - GO:0016405(PANTHER)
Lac10g0562 412 SUPERFAMILY Acetyl-CoA synthetase-like 60 410 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0562 Lac-Chr10:4324959 Lac10g0566 Lac-Chr10:4346402 1.10E-165 dispersed
Lac10g0558 Lac-Chr10:4322472 Lac10g0562 Lac-Chr10:4324959 1.30E-22 proximal
Lac10g0560 Lac-Chr10:4323838 Lac10g0562 Lac-Chr10:4324959 1.00E-11 proximal
Lac10g0562 Lac-Chr10:4324959 Lac10g0563 Lac-Chr10:4327415 8.90E-173 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g0562 K01904 - csv:101213796 546.969