Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g0563 ATGGCGGATCCGAATCCAAACTCCAACGCCGCCCATTTTGTTGACCGCCGGAGCGGTTTCTGTCCTGAAACGAAGATTTTCCACAGCCTCCGACCACCGCTCTCACTTCCACCAGTATCTCAGCCTCTCTCCATCACTGAACACGTCCTTTCTCTCCTCCAATCATCTCCTCCTCCGGCAACCGCCACCGTTCTCGTTGATTCCAACTCCGGCGTCCATCTCTCCTACGCCATTTTCCTCCGTCAAATTCGAATCCTCGCCGCTAATCTTAGAGCCCTAACCTCCCTCTTCAATGGTCAAGTGGCGTTTATTCTTGCACCGACTTCTCTGCAAGTCCCTGTGTTGTATTTCGCTCTGTTATCTCTCGGCGTTGTTATCTGTCCGGCTAATCCAACTGGTTCTCTATCGGAGATTTCTCATCAGGTTCGACTCTGTAATCCGGCCATTGCCTTCGCTACGTCCTCAACGGCGTCCAAGCTCCCGAGGCTTCGATTCGGCACCGTCCTGATCGATTCGCCTGAGTTTCTCTCTATGATGACGGAAATCAATCGATCTGATGGAAGCGATGATGGTTTACTCGACGGAAAAATCGATCAATCCGACTCGGCGGCGATTCTGTACTCGTCTGGTACTACAGGGCGAGTGAAAGGCGTGTTACTGAGTCATCGGAACCTTATTGTGGTGAACTCTGGGCCTCGTGCTCTTCAATCGGTAGTCGAGGAAGGAGAGATGGAGCCACGCCCGGTGTCTCTGTGTTTGTTGCCACTGTTCCATGTTTTCGGATTCGTGATGTTGATTCGAGCGATTTCGCGAGGCGAAACGTTGGTTCTGATGCAGAAATTCGACTTCGAGGCGATGTTGAGAGCGGTGGAGAAGTTTAGGGTTATGTACATCCCGGTTTCTCCGCCGCTGGTGGTGGCGATGGCTAAGTCGGAGCTGGTGGCGAAATTCGATCTCAGTTCTCTTCAAATTTTGGGATGCGGCGGCGCTCCTCTCGGAAAAGAAGTCATCGATAAATTCCATGAGAAGCTGCCCAATGTTGAAATTTTGCAGGGATATGGCTTGACAGAGAGTACAGCAGCAGCAGCAAGGACTCTGGGGCCTGAGGAAAGCAGTAATTCAAGATCAGTAGGTCGCCTATCTGAAAGTATGGAAGCCAAGATAGTGGATCCTTCTTCCGGAGAGGCCTTACCTCCTGGCCACAGTGGAGAGCTCTGGCTGCGAGGTCCCGTAGTCATGAAAGGTTATTTTGGAGATGACAAGGCGACTGTCGAAACCTTGCATCCAGAGGGATGGCTAAAGACTGGCGATCTTTGTTATTTTGATTCTGAAGGATTCCTCTACATTGTTGATAGAATAAAAGAATTGATCAAGTACAAGGCTTATCAGGTCCCACCTGCTGAATTGGAACATTTGCTTCAATCCAACCCTGAAATCATCGACGCTGCTGTGATACCCTATCCTGATGAAGAAGCTGGAGAGATTCCAATGGCTTATGTTGTTAGAAAGCCTGGAAGCAATATCACCGAGGCTCAAGTCATTGATTTCATTGCAAAACAGGTTGCACCATACAAGAAAATTCGACGAGTGTGTTTCATCAACGCAATCCCCAAATCGTCTGCAGGGAAGATCCTGAGGAGGGAGCTTGCCAAACATGCTCTCTCTCATGGTTCAAATAAGTTCCTCTGCACTGCACAAAATATAACATATGGCCATAGTTTCATTTGCAGGGAAGATTATGTAGCTGCAACCTGA 1755 49.29 MADPNPNSNAAHFVDRRSGFCPETKIFHSLRPPLSLPPVSQPLSITEHVLSLLQSSPPPATATVLVDSNSGVHLSYAIFLRQIRILAANLRALTSLFNGQVAFILAPTSLQVPVLYFALLSLGVVICPANPTGSLSEISHQVRLCNPAIAFATSSTASKLPRLRFGTVLIDSPEFLSMMTEINRSDGSDDGLLDGKIDQSDSAAILYSSGTTGRVKGVLLSHRNLIVVNSGPRALQSVVEEGEMEPRPVSLCLLPLFHVFGFVMLIRAISRGETLVLMQKFDFEAMLRAVEKFRVMYIPVSPPLVVAMAKSELVAKFDLSSLQILGCGGAPLGKEVIDKFHEKLPNVEILQGYGLTESTAAAARTLGPEESSNSRSVGRLSESMEAKIVDPSSGEALPPGHSGELWLRGPVVMKGYFGDDKATVETLHPEGWLKTGDLCYFDSEGFLYIVDRIKELIKYKAYQVPPAELEHLLQSNPEIIDAAVIPYPDEEAGEIPMAYVVRKPGSNITEAQVIDFIAKQVAPYKKIRRVCFINAIPKSSAGKILRRELAKHALSHGSNKFLCTAQNITYGHSFICREDYVAAT 584
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4327415 4331718 - Lag0024608.1 Lac10g0563 583094
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g0563 584 CDD 4CL 37 549 - -
Lac10g0563 584 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 20 549 - GO:0016405(PANTHER)
Lac10g0563 584 ProSitePatterns Putative AMP-binding domain signature. 205 216 IPR020845 -
Lac10g0563 584 FunFam 4-coumarate--CoA ligase 2 455 556 - -
Lac10g0563 584 Gene3D - 30 454 IPR042099 -
Lac10g0563 584 Pfam AMP-binding enzyme C-terminal domain 468 543 IPR025110 -
Lac10g0563 584 SUPERFAMILY Acetyl-CoA synthetase-like 57 555 - -
Lac10g0563 584 Pfam AMP-binding enzyme 61 417 IPR000873 -
Lac10g0563 584 Gene3D - 455 555 IPR045851 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0558 Lac-Chr10:4322472 Lac10g0563 Lac-Chr10:4327415 4.70E-28 dispersed
Lac10g0560 Lac-Chr10:4323838 Lac10g0563 Lac-Chr10:4327415 4.90E-30 dispersed
Lac10g0563 Lac-Chr10:4327415 Lac2g0105 Lac-Chr2:785034 4.00E-126 dispersed
Lac10g0561 Lac-Chr10:4324178 Lac10g0563 Lac-Chr10:4327415 7.10E-41 proximal
Lac10g0563 Lac-Chr10:4327415 Lac10g0566 Lac-Chr10:4346402 1.80E-256 proximal
Lac10g0562 Lac-Chr10:4324959 Lac10g0563 Lac-Chr10:4327415 8.90E-173 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g0563 K01904 - csv:101213796 885.174