Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g0566 ATGGCGAAACGAGATCCAAACCTCAACGCGGCCGTCCATTCTGTTGATCCCCGGAGCGGTTTCTGTCCTCAAACCAAGATTTTCCATAGCCTCCGACCACCGCTCTCGCTTCCGCCGATATCTCAGCCTCTCACCGTTGTCGGACACGCCCTTTCTCTTCTCCGATCATCCCCTCCTCCGGCGAACACTACCGCTCTCGTCGACCTCGACTCAGGCGTCAATGTCTCCTACGGTCTTTTCCTCCGTCAAATCCGAAACCTCGCCTCTAACCTTAGAGCTCTTTACTCCCTCTCCAATGGTCAAGTGGCTTTTATTCTTTCGCCGACTAACCTGCAAGTCCCTGTGTTGTATTTCGCTCTGTTATCTCTCGGCGTTATTGTCTCTCCGGCTAATCCCATTAGTTCCGAATCGGAGATTGCTCACCAGGTTCGACTCTGTAAACCGGTCATTGCCTTCGTTACGTCCTCGACGGCGTCCAAGCTCCCGAGGCTTCTACTTGGCACTGTCCTGATAGATTCGCCTGAGTTCCTATCTATGATGACTGAAAGTAGCCTGTCGGATGGAGTGGATGATGGTGTTGCCGACGTCAAAATCAATCAAAACGACTCGGCGGCGATTCTGTACTCGTCAGGGACTACCGGACGAGTGAAAGGCGTCGTGCTGTCTCACCGGAACCTCATATGGTCGATCTCTGGGGTTCACCAGTTTGAGACGACAGCCAACGAAAGAGAGATGGAGCCACATCCTGTCTCTCTGTCTTTATTACCTCTGTTCCATGTTTTCGGGTTCTATATAATGTTTCGATCGATTTCACTAGGCGATACGTTGGTTCTGATGCGAAAGTTCGACTTCGAGGGGATGTTAAGAGCAGTGGAGAAGTATAGGGTCACATACATTCCGGTTTCTCCGCCGCTGGTGTTGGCGATGGCGAAGTCGGAGCTGGTGGCGAAGTACGACCTCAGTTCTCTTCAAATTTTGGGATGCGGCGGCGCTCCCCTTGGGAAAGAAGTCATCGATAAATTCCATGCTAAGCTACCCAGCGTAGAAATTATACAGGGATATGGCTTGACAGAGAGTTCAGCAGCGGCTTCAAGGACTGTGGGACCTGAAGAATGCAGTAATACAAGTTCAGTAGGTCGCCTTTCTGAAAATCTGGAAGCCAAGATAGTGGATCCTTCATCTGGAGAGGCCTTACCTCCTGGCCACAAAGGAGAGCTTTGGCTGCGAGGTCCAGGAATCATGAAAGGTTATGTTGGAGATGAGAAGGCAACAGCTGAAACCTTGCATCCAGAGGGATGGTTAAAGACTGGCGATCTTTGCTATTTTGATTCTGATGGATTCCTCTACATTGTCGATAGATTAAAAGAATTGATCAAGTACAAAGCTTATCAGGTCCCACCTGCTGAATTGGAACATCTGCTTCTATCCAACCCCGAGATCACCGATGCCGCTGTGATACCCTATCCTAACGAAGAAGCAGGACAGATTCCCTTGGCTTATGTGGTTAGAAAGCCTGGAAGCAATATCAGCGAGGCCCAAGTCATTGATTTCATTGCAAAACAGGTTGCCCCATACAAGAAAATCCGGCGAGTGTCTTTTGTCAACACGATCCCGAAATCGCCTGCAGGGAAGATTCTTAGGAGGGAGCTTGTTAAACATGCTGTCTCTCATGGTTCTAGTAAGTTATAA 1689 49.56 MAKRDPNLNAAVHSVDPRSGFCPQTKIFHSLRPPLSLPPISQPLTVVGHALSLLRSSPPPANTTALVDLDSGVNVSYGLFLRQIRNLASNLRALYSLSNGQVAFILSPTNLQVPVLYFALLSLGVIVSPANPISSESEIAHQVRLCKPVIAFVTSSTASKLPRLLLGTVLIDSPEFLSMMTESSLSDGVDDGVADVKINQNDSAAILYSSGTTGRVKGVVLSHRNLIWSISGVHQFETTANEREMEPHPVSLSLLPLFHVFGFYIMFRSISLGDTLVLMRKFDFEGMLRAVEKYRVTYIPVSPPLVLAMAKSELVAKYDLSSLQILGCGGAPLGKEVIDKFHAKLPSVEIIQGYGLTESSAAASRTVGPEECSNTSSVGRLSENLEAKIVDPSSGEALPPGHKGELWLRGPGIMKGYVGDEKATAETLHPEGWLKTGDLCYFDSDGFLYIVDRLKELIKYKAYQVPPAELEHLLLSNPEITDAAVIPYPNEEAGQIPLAYVVRKPGSNISEAQVIDFIAKQVAPYKKIRRVSFVNTIPKSPAGKILRRELVKHAVSHGSSKL 562
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4346402 4349446 - Lag0024611.1 Lac10g0566 583097
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g0566 562 Pfam AMP-binding enzyme C-terminal domain 469 544 IPR025110 -
Lac10g0566 562 CDD 4CL 38 550 - -
Lac10g0566 562 Gene3D - 456 557 IPR045851 -
Lac10g0566 562 Pfam AMP-binding enzyme 60 417 IPR000873 -
Lac10g0566 562 SUPERFAMILY Acetyl-CoA synthetase-like 61 556 - -
Lac10g0566 562 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 21 550 - GO:0016405(PANTHER)
Lac10g0566 562 FunFam 4-coumarate--CoA ligase 2 456 557 - -
Lac10g0566 562 Gene3D - 40 455 IPR042099 -
Lac10g0566 562 ProSitePatterns Putative AMP-binding domain signature. 206 217 IPR020845 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0561 Lac-Chr10:4324178 Lac10g0566 Lac-Chr10:4346402 6.00E-40 dispersed
Lac10g0562 Lac-Chr10:4324959 Lac10g0566 Lac-Chr10:4346402 1.10E-165 dispersed
Lac10g0566 Lac-Chr10:4346402 Lac2g0105 Lac-Chr2:785034 1.50E-125 dispersed
Lac10g0563 Lac-Chr10:4327415 Lac10g0566 Lac-Chr10:4346402 1.80E-256 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g0566 K01904 - csv:101211791 922.924