Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g0576 ATGAGTTCGATTCGAGATTGTTCCGGACGTTCGCCACCATTTGAAGCGACCGGAGAACTACAAGGAAATCTAAATTCCATGGCGGATCTGATTCCACCACCGCATAGATCGGCCAACGACCTCTTTTCGGATCCACTTGATTCTCATCCTCTCTGGTTCAAGCCCGACTTATTTCTCTCCCCGAATTTTGATTCCGAGTCCTACATATCTGAGCTTCGGACATTTGTCCCATTTGACACCCTCCGATCTCAGCTCCACTCTCATCTCTCCGCTCTGAACCGTGAGCTTATTGACTTGATCAATCGTGACTATACCGATTTTGTCAACCTGAGTACAAAGCTTGTCGATGTGGAAGCGGCAGTCGTGCGAATGCGAGCTCCTTTGGTTGAGCTCAGGGAGAAAATTGAGCAATTCAGGGGTTCTGTGGAGTTTTCTCTCTCAGCTTTGCAGAATGGATTGCGGCAGAGATCAGAGGCAGCATCGGCCAGAGAGGTCTTGGAATTGTTGCTCGATACGTTTCACGTCGTGTCGAAGGTTGAAAAACTGATCAAGGAGCTTCCAAGTGCACCTGCTGATGGCTCAAATGGAAATATGAACTTAACAGATAAAAGTGTATTAAGTAATGGTACTTCTTTAGCACACATGGAGAACGGAACAAATCTTAGAGAAACACAAAGCATGCTCTTGGAAAGAATTTCCAGTGAAATGAATCGGCTGAAATTTTACATTGCTCATGCCCAGAATCTTCCCTTCATTCAAAATATGGACAAGAGGATTCAGAGTGCCAGCATGTTGCTGGACACGAGCTTGGGACATTGTTTTGTTGATGGACTTGAACATCGTGATGAAAATGCTATTTATAATTGCTTACGAGCCTATGCTGCCATTGATAACACCACAAGTGCAGAAGAAATTTTTCGCACTACCGTTGTAGCACCATCAATTCATAAAGTTATTCCACATGAAGTTTCCGGCGTGGATGCTGGATCATCTGGTGATGATCTGGAGAATGATTACAAGCAAATGAAGCAATATATTGATAAAGACTGCAAATTTTTGTTAGAAATATCTGCTACAGAAAACTCAGGATTACATGTATTTGACTTCTTGGCTAATTCAATCCTGAAAGAGGTTCTTTCTGCTATCCAAAAGGCAAAACCAGGTGCATTTTCCCCAGGAAGACCTACTGAATTCTTAAAGAACTACAAGTCAAGCCTTGATTTCTTGGCATACTTGGAAGGCTATTGTCCATCCAGATCTGTTGTTGCTAAATTTCGAGCTGCAGCTGTGTATAATGAGTTCATGAAGCAATGGAATACTGGGGTTTATTTTTCTCTGAGGTTTCAGGAAATAGCCGGGGCTTTGGATTCATCCCTTTCGGCTCCCAGTCTAACCCCTGTCCAAACTTCATCTTCTGGCCGGGGAAATACTCAGGATCTAACATTAAAGCAAAGTGTAATGCTTTTAGACTGCCTGACAGCATGCTGGAGAGAGGATGTTCTCGTCCTTTCTTGTTCTGACAAGTTTCTTCGTCTATCTTTGCAGCTCATTTCAAGATACTCTAACTGGTTGTCATCTGGTCTGGCTGCCCGTAAGATGGGTACAGGCTCCAATCCAGGTTCTGAATGGGCTGTAGCAACTGCCCCAGATGATTTAATATATATAATCCATGACCTTGATTGTCTGGCCACGGTGGTATCTGGTAACTTCCTGGAAACTGTACTTCAGCTCCTATCATCATGCACTGCAGATGTTCTTGATTCAGTAAAGCACAGCGTTTTGCACAGTGGAAAGTCATTGAATAATTTAATACCCGAAGTTATTGGTGCCATAGTTGCATCATTGGTTGAGAAGTCTGTTGAGGACTTGAGACAGCTGAAGGGTATAACGGCAACATACAGGATGACCAATAAACCGCTTCCTGTAAGGCATTCGCCCTATGTATCAGGGCTGCTACGCCCCCTCAAGGCCTTATTGGATGGAGAGAGAGCGGCAACTCTTTTGACATCGGAAACAAGGAATGCTCTACTGCTCGGTGGTGTGACAGAGATTACTGGACGTTATTACGAACAAGTAGCCGATCTTGTTAGCTTGGCTAGGAAAACAGATTCGTCCCTCCAGAAAATCCGGCAGGGAGTACAAAGACGAGCTGGAGCAAGCTCAGATGTTTCAGACCATAACATCTCTGACACTGACAAGATTTGCATGCAACTCTTTCTTGATATTCAGGAGTATGGCCGCAACCTTTCAGCCCTTGGGTTTGAAGCGGTGAGTATCCCCACATACCGTTCGTTTTGGCAGTGTGTTGCCCCTCCAGACAGGCAGAGCTCCATTAAGCCGAAAACCCTAGACACCACACAGGCTTTAGCAATTCCCGGCATCGGCATCCAGCCTCGTCTTCATTTTTTGTGTTGCAGTGTCCCTGCCGCCGAGAGAAATTCGCATCATTTTGCAATGGCGGTCGCATTACATGATGTCAAGTCGGCAGCCGGTTTGAAAAAACTCGATGAATACTTGCTTAGTCGTAGCTACATTTCCGGGTATCAGCCTTCTAAGGATGATGTTGCCGTTTACGAAGCTCTCTCCAAACCCGTATCCAGCGAATATGTTAACGTGTCCAGGTGGAGCAATCACATCGAAGCACTCTTGAGAGTTTCCGCTGTTTTTGGAGAGGGATCGGGCGTTAAGTTCGCTGAGGCAATTGCAACCCCACCGGCCGCGGACGCAAAGGCTGCTGCCGCTGCCGCTGATGACGACGATGACGATGATATGGATCTATTTGGTGAGGAGACTGAAGAGGAAAAGAAGGCTGCAGAGGAGCGTGCAGCTGCCATCAAGGCGTCTGCAAAGAAGAAGGAGTCTGGCAAGTCATCAGTTCTGATGGATATTAAGCCTTGGGATGATGAGACTGACATGAAGAAACTTGAAGAGGCTGTAAGAAGTGTTGAGATGGAAGGTTTGCTCTGGGGAGCATCCAAACTTGTCCCTGTTGGATATGGTATTAAGAAATTGCAGATAATGCTCACAATTGTTGATGACCTTGTGTCTGTTGACAATCTCATCGAGGAACGTCTGACTGTTGAACCCATAAACGAGCATGTCCAGAGCTGTGATATCGTGGCCTTCAACAAAATATGCCCAAGAAAGATGCGCCATAGATCAAGTACTATTGTCACCAACATTGCTGCTCCCAGAGAATCAACAGCCACTCTTGTTTCAGAGTGTGAGTTTACTGGAGAAGCCAAAACCAGTTTTGACTCTGATAGGAAACAAAACTCGGAAGCCTATAACATAGACGATTTCTTCAAGTTTCGAGCGGTAGGAGATGGCCGTGAACTATATATGTTACCACCTAATAATCTGAAGGGTACTGACTCTTCTGGTTCTTCGAGTGTATTGGATATCCTAATGAAATTACAGCTAATGTAA 3429 45.17 MSSIRDCSGRSPPFEATGELQGNLNSMADLIPPPHRSANDLFSDPLDSHPLWFKPDLFLSPNFDSESYISELRTFVPFDTLRSQLHSHLSALNRELIDLINRDYTDFVNLSTKLVDVEAAVVRMRAPLVELREKIEQFRGSVEFSLSALQNGLRQRSEAASAREVLELLLDTFHVVSKVEKLIKELPSAPADGSNGNMNLTDKSVLSNGTSLAHMENGTNLRETQSMLLERISSEMNRLKFYIAHAQNLPFIQNMDKRIQSASMLLDTSLGHCFVDGLEHRDENAIYNCLRAYAAIDNTTSAEEIFRTTVVAPSIHKVIPHEVSGVDAGSSGDDLENDYKQMKQYIDKDCKFLLEISATENSGLHVFDFLANSILKEVLSAIQKAKPGAFSPGRPTEFLKNYKSSLDFLAYLEGYCPSRSVVAKFRAAAVYNEFMKQWNTGVYFSLRFQEIAGALDSSLSAPSLTPVQTSSSGRGNTQDLTLKQSVMLLDCLTACWREDVLVLSCSDKFLRLSLQLISRYSNWLSSGLAARKMGTGSNPGSEWAVATAPDDLIYIIHDLDCLATVVSGNFLETVLQLLSSCTADVLDSVKHSVLHSGKSLNNLIPEVIGAIVASLVEKSVEDLRQLKGITATYRMTNKPLPVRHSPYVSGLLRPLKALLDGERAATLLTSETRNALLLGGVTEITGRYYEQVADLVSLARKTDSSLQKIRQGVQRRAGASSDVSDHNISDTDKICMQLFLDIQEYGRNLSALGFEAVSIPTYRSFWQCVAPPDRQSSIKPKTLDTTQALAIPGIGIQPRLHFLCCSVPAAERNSHHFAMAVALHDVKSAAGLKKLDEYLLSRSYISGYQPSKDDVAVYEALSKPVSSEYVNVSRWSNHIEALLRVSAVFGEGSGVKFAEAIATPPAADAKAAAAAADDDDDDDMDLFGEETEEEKKAAEERAAAIKASAKKKESGKSSVLMDIKPWDDETDMKKLEEAVRSVEMEGLLWGASKLVPVGYGIKKLQIMLTIVDDLVSVDNLIEERLTVEPINEHVQSCDIVAFNKICPRKMRHRSSTIVTNIAAPRESTATLVSECEFTGEAKTSFDSDRKQNSEAYNIDDFFKFRAVGDGRELYMLPPNNLKGTDSSGSSSVLDILMKLQLM 1142
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4416372 4430577 - Lag0024621.1 Lac10g0576 583107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g0576 1142 CDD EF1B 954 1045 IPR014038 GO:0003746(InterPro)|GO:0006414(InterPro)
Lac10g0576 1142 PANTHER CONSERVED OLIGOMERIC GOLGI COMPLEX COMPONENT 2 37 775 IPR009316 GO:0006891(PANTHER)|GO:0007030(PANTHER)|GO:0007030(InterPro)|GO:0015031(InterPro)|GO:0016020(InterPro)|GO:0017119(PANTHER)
Lac10g0576 1142 SUPERFAMILY GST C-terminal domain-like 826 887 IPR036282 -
Lac10g0576 1142 ProSitePatterns Elongation factor 1 beta/beta'/delta chain signature 1. 920 928 IPR001326 GO:0003746(InterPro)|GO:0006414(InterPro)
Lac10g0576 1142 Gene3D - 815 893 - -
Lac10g0576 1142 FunFam Elongation factor 1-beta 1 like 950 1045 - -
Lac10g0576 1142 FunFam Elongation factor 1-delta 1 821 896 - -
Lac10g0576 1142 SUPERFAMILY eEF-1beta-like 953 1045 IPR036219 -
Lac10g0576 1142 ProSitePatterns Elongation factor 1 beta/beta'/delta chain signature 2. 1034 1045 IPR001326 GO:0003746(InterPro)|GO:0006414(InterPro)
Lac10g0576 1142 SMART EF1_GNE_2 956 1045 IPR014038 GO:0003746(InterPro)|GO:0006414(InterPro)
Lac10g0576 1142 MobiDBLite consensus disorder prediction 915 929 - -
Lac10g0576 1142 Gene3D - 949 1045 IPR014717 -
Lac10g0576 1142 Pfam COG complex component, COG2, C-terminal 436 742 IPR024603 -
Lac10g0576 1142 Coils Coil 928 948 - -
Lac10g0576 1142 Pfam COG2 N-terminal 51 125 IPR024602 -
Lac10g0576 1142 MobiDBLite consensus disorder prediction 911 937 - -
Lac10g0576 1142 Pfam EF-1 guanine nucleotide exchange domain 958 1045 IPR014038 GO:0003746(InterPro)|GO:0006414(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0576 Lac-Chr10:4416372 Lac9g2097 Lac-Chr9:40617915 2.60E-12 dispersed
Lac10g0576 Lac-Chr10:4416372 Lac10g0578 Lac-Chr10:4459051 1.70E-88 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g0576 K20289 - csv:101215350 1365.9